Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_M22
(860 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 89 1e-18
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 58 1e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 58 2e-09
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 54 2e-08
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 54 3e-08
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 52 8e-08
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 52 1e-07
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 48 2e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 47 3e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 46 5e-06
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 46 7e-06
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 45 2e-05
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 44 3e-05
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 44 3e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 41 2e-04
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 40 6e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 39 0.001
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 36 0.007
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 35 0.013
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.023
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 34 0.030
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 34 0.030
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 32 0.12
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 2.0
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 2.6
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 27 3.4
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 26 6.0
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 26 7.9
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 88.6 bits (210), Expect = 1e-18
Identities = 42/98 (42%), Positives = 65/98 (66%)
Frame = +3
Query: 315 RFPWKKPVKLFVNSNKEVAFNLRQEFVRIRKERECDREAMLAALVCRTFRDRTVVFVQTK 494
R +PV++FV++ K A L QEFVR+R +RE R AML L F RT++F ++K
Sbjct: 455 RLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSK 514
Query: 495 RQAHRLHVMLGMLGVRAAELHGALNQPQRLDSLKRFRE 608
AH++ V+ G+L + A E+HG+L+Q QR+ +L+ FR+
Sbjct: 515 AFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRD 552
Score = 72.5 bits (170), Expect = 7e-14
Identities = 32/58 (55%), Positives = 47/58 (81%)
Frame = +2
Query: 152 FGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSL 325
F + +IE++V+DEADRML++ FA+++ EII+ C RQTMLFSATM+++V DL +SL
Sbjct: 401 FTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSL 458
Score = 42.7 bits (96), Expect = 6e-05
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = +1
Query: 58 LNIRKCVLRQNPDIVIATPGRLIDHIRNT 144
L +++ LR+ PDIVIATPGR IDH+RN+
Sbjct: 370 LKLQEQELRKRPDIVIATPGRFIDHMRNS 398
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +1
Query: 613 QADVLVATDVAARGLDIPG 669
+ + L+ATDVA+RG+DI G
Sbjct: 554 KCNYLLATDVASRGIDIKG 572
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 58.4 bits (135), Expect = 1e-09
Identities = 40/99 (40%), Positives = 56/99 (56%)
Frame = +2
Query: 47 RIRC*ISGNACCVRTPT***RRRVDSSITYGTHPRFGLHSIEVLVLDEADRMLDEYFAEQ 226
+IR I G C+ TP R +D + T+ L + LVLDEADRMLD F Q
Sbjct: 238 QIRDLIRGVEICIATPG----RLLDMLDSNKTN----LRRVTYLVLDEADRMLDMGFEPQ 289
Query: 227 MKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLEETRQI 343
+++I+ Q P RQT++FSAT +EV+ LA L + Q+
Sbjct: 290 IRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQV 328
Score = 29.9 bits (64), Expect = 0.49
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +1
Query: 613 QADVLVATDVAARGLDIPGGQH 678
++ ++VATDVA+RG+D+ G H
Sbjct: 419 KSPIMVATDVASRGIDVKGITH 440
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 57.6 bits (133), Expect = 2e-09
Identities = 28/59 (47%), Positives = 39/59 (66%)
Frame = +2
Query: 152 FGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLE 328
F +++L+LDEADR+LD F + I+ RQTMLFSAT ++ VKDLA +SL+
Sbjct: 181 FDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSLQ 239
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 54.4 bits (125), Expect = 2e-08
Identities = 27/60 (45%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Frame = +2
Query: 152 FGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQC-SPKRQTMLFSATMSEEVKDLAAVSLE 328
F ++ LV+DEADR+L+ F ++M++I++ S RQT+LFSAT + +V+DLA +SL+
Sbjct: 232 FVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLARISLK 291
Score = 31.5 bits (68), Expect = 0.16
Identities = 10/17 (58%), Positives = 17/17 (100%)
Frame = +1
Query: 94 DIVIATPGRLIDHIRNT 144
++++ATPGRL+DH++NT
Sbjct: 213 NLLVATPGRLLDHLQNT 229
Score = 28.7 bits (61), Expect = 1.1
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Frame = +3
Query: 330 KPVKLFVN--SNKEVAF--NLRQEFVRIRKERECDREAMLAALVCRTFRDRTVVFVQTKR 497
KP L+VN S K + L Q +V + ++ R +L + + R + + +VF+ +
Sbjct: 291 KPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDK---RFLLLFSFLKRNLKKKVIVFMSSCA 347
Query: 498 QAHRLHVMLGMLGVRAAELHGALNQPQRLDSLKRFREA 611
+ +L + + +LHG Q +R ++ F A
Sbjct: 348 SVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNA 385
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +1
Query: 622 VLVATDVAARGLDIP 666
+L+ T+VAARGLDIP
Sbjct: 389 ILLCTNVAARGLDIP 403
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 53.6 bits (123), Expect = 3e-08
Identities = 26/58 (44%), Positives = 36/58 (62%)
Frame = +2
Query: 158 LHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLEE 331
L SIE +V DEADR+ + FA Q+ EI+ RQT+LFSAT+ + D A L++
Sbjct: 211 LSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQD 268
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +1
Query: 613 QADVLVATDVAARGLDIP 666
+ ++LV TDVA+RG+DIP
Sbjct: 396 KTNLLVVTDVASRGIDIP 413
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 76 VLRQNPDIVIATPGRLIDHIR 138
+L PDIV+ATPGR + H++
Sbjct: 185 LLSGKPDIVVATPGRFL-HLK 204
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 52.4 bits (120), Expect = 8e-08
Identities = 29/62 (46%), Positives = 36/62 (58%)
Frame = +2
Query: 158 LHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLEETR 337
LH LVLDEADRM D F Q+ II P RQT+LFSAT ++ LA L++
Sbjct: 566 LHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPV 625
Query: 338 QI 343
+I
Sbjct: 626 EI 627
Score = 31.5 bits (68), Expect = 0.16
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Frame = +3
Query: 327 KKPVKLFVNSNKEVAFNLRQEFVRIRKERECDREAM--LAALVCRTFRDRTVVFVQTKRQ 500
KKPV++ V VA + Q V +R E + L L RT+VFV +
Sbjct: 622 KKPVEITVGGRSVVASEVEQ-IVEVRPEESKFSRLLELLGELYNNQLDVRTLVFVDRQES 680
Query: 501 AHRLHVMLGMLGVRAAELHGALNQPQRLDSLKRFR 605
A L L G + +HG +Q R ++ ++
Sbjct: 681 ADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYK 715
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1
Query: 619 DVLVATDVAARGLDI 663
DVL+AT V ARGLD+
Sbjct: 720 DVLIATSVVARGLDV 734
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 79 LRQNPDIVIATPGRLID 129
L++ +IV+ TPGR+ID
Sbjct: 538 LKRGAEIVVCTPGRMID 554
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 51.6 bits (118), Expect = 1e-07
Identities = 24/60 (40%), Positives = 41/60 (68%)
Frame = +2
Query: 152 FGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLEE 331
F L +++ L++DEADR+LD F + +I++ +R+T+LFSATM+ +V+ L SL +
Sbjct: 185 FSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASLHQ 244
Score = 43.2 bits (97), Expect = 5e-05
Identities = 44/196 (22%), Positives = 74/196 (37%)
Frame = +3
Query: 18 IGVLWVLSVGGLDVKYQEMRAASEPRHSDSDAGSTHRSHTEHTLXSGSTASRFWCWTKLT 197
IGV V+ VGG+D+ Q + + +P G H E+T ++ +
Sbjct: 141 IGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRL-MDHLENTKGFSLKNLKYLIMDEAD 199
Query: 198 GCWMNTXXXXXXXXXXXXPLNVRPCCSRPP*ARKSRTWRRFPWKKPVKLFVNSNKEVAFN 377
P R K +R +PV++ V+S
Sbjct: 200 RLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDT 259
Query: 378 LRQEFVRIRKERECDREAMLAALVCRTFRDRTVVFVQTKRQAHRLHVMLGMLGVRAAELH 557
L Q ++ + ++ L LV + ++F +T RL ++L LG A LH
Sbjct: 260 LIQRYLFFPFKH---KDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLH 316
Query: 558 GALNQPQRLDSLKRFR 605
G L+Q RL +L +F+
Sbjct: 317 GQLSQSNRLGALNKFK 332
Score = 33.1 bits (72), Expect = 0.052
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 79 LRQNPDIVIATPGRLIDHIRNT 144
L + P +++ TPGRL+DH+ NT
Sbjct: 161 LSKKPHVLVCTPGRLMDHLENT 182
Score = 31.1 bits (67), Expect = 0.21
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +1
Query: 625 LVATDVAARGLDIP 666
LVATDVAARGLDIP
Sbjct: 339 LVATDVAARGLDIP 352
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 47.6 bits (108), Expect = 2e-06
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Frame = +2
Query: 149 RFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCS----PKRQTMLFSATMSEEVKDLAA 316
R L +I+ LVLDEADRMLD F Q++ I+ +RQT++FSAT +++ LA
Sbjct: 324 RISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLAR 383
Query: 317 VSLEE 331
L++
Sbjct: 384 DFLKD 388
Score = 31.1 bits (67), Expect = 0.21
Identities = 23/77 (29%), Positives = 35/77 (45%)
Frame = +3
Query: 375 NLRQEFVRIRKERECDREAMLAALVCRTFRDRTVVFVQTKRQAHRLHVMLGMLGVRAAEL 554
N+ Q+ V + + R +L L T++FV+TKR A L L A +
Sbjct: 403 NITQKVVHVEDSEK--RSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSI 460
Query: 555 HGALNQPQRLDSLKRFR 605
HG Q +R +L+ FR
Sbjct: 461 HGDRTQRERERALELFR 477
Score = 29.1 bits (62), Expect = 0.85
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 613 QADVLVATDVAARGLDIPGGQH 678
+ ++VAT VA+RGLDIP H
Sbjct: 480 RTSIMVATAVASRGLDIPNVTH 501
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 47.2 bits (107), Expect = 3e-06
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +2
Query: 167 IEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVS 322
+E+L+LDEAD ++D F ++ II Q +R+T LFSATM++ V ++
Sbjct: 155 LEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLFSATMNDTVSSFLKIA 206
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1
Query: 622 VLVATDVAARGLDIP 666
VL TD+A+RGLDIP
Sbjct: 312 VLFTTDIASRGLDIP 326
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 46.4 bits (105), Expect = 5e-06
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Frame = +2
Query: 176 LVLDEADRMLDEYFAEQMKEIIRQC-----SPKRQTMLFSATMSEEVKDLAAVSLEETRQ 340
LVLDEADRMLD F + ++ II + RQT+ FSAT E V+ LAA L++ +
Sbjct: 313 LVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVK 372
Query: 341 I 343
I
Sbjct: 373 I 373
Score = 33.1 bits (72), Expect = 0.052
Identities = 18/22 (81%), Positives = 18/22 (81%)
Frame = +1
Query: 601 SGKQQADVLVATDVAARGLDIP 666
SGK VLVATDVAARGLDIP
Sbjct: 464 SGK--CPVLVATDVAARGLDIP 483
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 46.0 bits (104), Expect = 7e-06
Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Frame = +2
Query: 155 GLHSIEVLVLDEADRMLDEYFAEQMKEI--IRQCSPKRQTMLFSATMSEEVKDL 310
GL I+ LV+DEADR+L FA+ + + + S RQT+LF+AT+++ ++ L
Sbjct: 150 GLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATVTDAIRQL 203
Score = 41.5 bits (93), Expect = 1e-04
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Frame = +3
Query: 327 KKPVKLFV--NSNKEVAFNLRQEFVRIRKERECDREAMLAALVC--RTFRDRTVVFVQTK 494
K P+ L+ N V L+Q ++ + + REA L L+ + ++FV
Sbjct: 212 KPPLWLYEVETDNISVPSTLQQSYIFVSSQV---REAYLVHLLTIPENAKKSAIIFVNRT 268
Query: 495 RQAHRLHVMLGMLGVRAAELHGALNQPQRLDSLKRFR 605
R A ++ +L +L +R ELH + Q +R++SL RFR
Sbjct: 269 RTAELIYSILRLLELRVTELHSEMVQRERINSLGRFR 305
Score = 33.5 bits (73), Expect = 0.039
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1
Query: 610 QQADVLVATDVAARGLDIPGGQ 675
+ A +LVATDVA+RGLDIP Q
Sbjct: 307 EAAKILVATDVASRGLDIPSVQ 328
Score = 29.9 bits (64), Expect = 0.49
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 64 IRKCV-LRQNPDIVIATPGRLIDHIRN 141
IR+ + L + P +V+ATPGRL D IR+
Sbjct: 116 IRQSIDLSKRPHVVVATPGRLADLIRS 142
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 44.8 bits (101), Expect = 2e-05
Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Frame = +2
Query: 158 LHSIEVLVLDEADRMLDEY-FAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLEET 334
++S++ VLDE D++L+ ++E+ R P++Q M+FSAT+S E++ + ++
Sbjct: 195 VNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQNP 254
Query: 335 RQI 343
+I
Sbjct: 255 LEI 257
Score = 32.7 bits (71), Expect = 0.069
Identities = 21/95 (22%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Frame = +3
Query: 327 KKPVKLFVNSNKEVAFN-LRQEFVRIRKERECDREAMLAALVCRTFRDRTVVFVQTKRQA 503
+ P++++V+ ++ + L+Q +V++ +E+ +R+ + L+ ++ V+FV++ +A
Sbjct: 252 QNPLEIYVDDETKLTLHGLQQHYVKL-EEKAKNRK--INDLLDSLEFNQVVIFVKSVSRA 308
Query: 504 HRLHVMLGMLGVRAAELHGALNQPQRLDSLKRFRE 608
+ L +L + +HG L Q +R+ K F++
Sbjct: 309 NELDRLLRECNFPSICIHGGLPQEERIKRYKAFKD 343
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 44.0 bits (99), Expect = 3e-05
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = +2
Query: 164 SIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLEETRQI 343
++++ VLDEAD ML F +Q+ +I + P Q +L SATM ++V ++ + + +I
Sbjct: 161 AVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRI 220
Query: 344 V 346
+
Sbjct: 221 L 221
Score = 32.7 bits (71), Expect = 0.069
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +3
Query: 327 KKPVKLFVNSNKEVAFNLRQEFVRIRKER-ECDREAMLAALVCRTFRDRTVVFVQTKRQA 503
+ P+++ V ++ ++Q +V + KE + D L V T + V+F T+R+
Sbjct: 215 RDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTVT---QAVIFCNTRRKV 271
Query: 504 HRLHVMLGMLGVRAAELHGALNQPQRLDSLKRFR 605
L L + +HG ++Q QR + FR
Sbjct: 272 DWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFR 305
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 44.0 bits (99), Expect = 3e-05
Identities = 18/49 (36%), Positives = 35/49 (71%)
Frame = +2
Query: 164 SIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDL 310
++++L+LDEAD +L++ F EQ+ +I R P Q ++ SAT+ ++V ++
Sbjct: 163 NVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEM 211
Score = 28.7 bits (61), Expect = 1.1
Identities = 20/92 (21%), Positives = 40/92 (43%)
Frame = +3
Query: 333 PVKLFVNSNKEVAFNLRQEFVRIRKERECDREAMLAALVCRTFRDRTVVFVQTKRQAHRL 512
PV++ V ++ L+Q F+ + KE + L L + V+F ++R+ L
Sbjct: 219 PVRILVKRDELTLEGLKQYFIAVEKEEW--KFDTLCDLYDTLTITQAVIFCNSRRKVDWL 276
Query: 513 HVMLGMLGVRAAELHGALNQPQRLDSLKRFRE 608
+ +HG + Q +R ++ FR+
Sbjct: 277 TEKMREANFTVTSMHGEMPQKERDAIMQDFRQ 308
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 41.1 bits (92), Expect = 2e-04
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +2
Query: 167 IEVLVLDEADRMLDEYFAEQMKEIIRQC-SPKRQTMLFSATMSEEVKDLA-AVSLEETRQ 340
+E V+DEADR+ + F EQ I+ C S LFSAT+ V++LA V+++ R
Sbjct: 190 VEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPIRI 249
Query: 341 IV 346
IV
Sbjct: 250 IV 251
Score = 32.3 bits (70), Expect = 0.091
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 462 RDRTVVFVQTKRQAHRLHVMLGMLGVRAAELHGALNQPQRLDSLKRFRE 608
+ R V+FVQ +A L+ L + +HG L Q +R ++L +FR+
Sbjct: 288 KPRVVIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRK 336
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 39.5 bits (88), Expect = 6e-04
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 167 IEVLVLDEADRMLDEYFAEQMKEIIRQCSPKR-QTMLFSATMSEEVKDLA 313
I+V VLDEAD MLD+ I+ P+ Q +LFSAT SE V+ A
Sbjct: 255 IKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYA 304
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 38.7 bits (86), Expect = 0.001
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +2
Query: 158 LHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDL 310
L ++ LV+DEAD ML + E MK + R Q+ L SAT+S+ + L
Sbjct: 162 LDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIASL 212
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 64 IRKCVLRQNPDIVIATPGRLIDHI 135
+++ +L PDIVIATP R + H+
Sbjct: 132 VQRPLLLDLPDIVIATPSRCVVHV 155
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 35.9 bits (79), Expect = 0.007
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Frame = +2
Query: 167 IEVLVLDEADRMLDEYFAEQMKEII----RQCSPKRQTMLFSATMSE 295
I+ LVLDEADR+L + E++ +++ +RQT +FSAT E
Sbjct: 269 IKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDE 315
Score = 31.9 bits (69), Expect = 0.12
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +1
Query: 622 VLVATDVAARGLDIPGGQH 678
VLV TDVAARG+DIP H
Sbjct: 442 VLVCTDVAARGIDIPSVTH 460
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +1
Query: 76 VLRQNPDIVIATPGRL 123
+L ++P +V+ATPGRL
Sbjct: 238 LLNKHPHVVVATPGRL 253
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 35.1 bits (77), Expect = 0.013
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 164 SIEVLVLDEADRMLDEYFAEQMKEIIRQ-CSPKRQTMLFSATMSEEVKDL 310
S + +LDEADR++D FAE + I + K + + FSATM +V ++
Sbjct: 188 STDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNV 237
Score = 31.5 bits (68), Expect = 0.16
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +1
Query: 76 VLRQNPDIVIATPGRLIDHIRN 141
+ R N +++IATPGRL DH++N
Sbjct: 159 IRRGNANLLIATPGRLEDHLQN 180
Score = 29.1 bits (62), Expect = 0.85
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 607 KQQADVLVATDVAARGLDIP 666
K Q+ +L ATDV ARG+D P
Sbjct: 341 KCQSGILFATDVVARGMDFP 360
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 34.3 bits (75), Expect = 0.023
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +1
Query: 94 DIVIATPGRLIDHIRNTPS 150
D++++TPGRL+DHIRN S
Sbjct: 262 DVLVSTPGRLVDHIRNDES 280
Score = 31.9 bits (69), Expect = 0.12
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +2
Query: 152 FGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCS-PK 259
F L + +V+DEADR+LD+ F + + ++ + S PK
Sbjct: 281 FSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPK 317
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 33.9 bits (74), Expect = 0.030
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 70 KCVLRQNPDIVIATPGRLIDHIRNTPSXRAPQHR 171
K +R+ +I+I TPGRL DH+ NT + Q R
Sbjct: 263 KARIRKGVNILIGTPGRLADHLENTEALDVSQVR 296
Score = 31.1 bits (67), Expect = 0.21
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 13/65 (20%)
Frame = +2
Query: 176 LVLDEADRMLDEYFAEQMKEII----RQCS--------PKRQ-TMLFSATMSEEVKDLAA 316
+VLDE DR++D F E + +I+ Q S P R+ TML SATM + VK L+
Sbjct: 298 VVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSD 357
Query: 317 VSLEE 331
+L++
Sbjct: 358 SALKD 362
Score = 29.9 bits (64), Expect = 0.49
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 577 SAWTL*SVSGKQQADVLVATDVAARGLDIP 666
S L S S + +L+ TDVAARGLD+P
Sbjct: 484 STLNLFSSSEDSGSHILLCTDVAARGLDLP 513
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 33.9 bits (74), Expect = 0.030
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 459 FRDRTVVFVQTKRQAHRLHVMLGMLGVRAAELHGALNQPQRLDSLKRFREAT 614
F ++FV KR + L +G A LHG+ +Q QR ++++ R T
Sbjct: 515 FSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKT 566
Score = 33.5 bits (73), Expect = 0.039
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +1
Query: 616 ADVLVATDVAARGLDIP 666
AD+LVATD+A RG+DIP
Sbjct: 567 ADILVATDIAGRGIDIP 583
Score = 31.5 bits (68), Expect = 0.16
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 19/79 (24%)
Frame = +2
Query: 152 FGLHSIEVLVLDEADRMLDEYFAEQMKEII-------------------RQCSPKRQTML 274
F L +V+DEADRMLD F + + +I+ S +RQT++
Sbjct: 395 FVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIM 454
Query: 275 FSATMSEEVKDLAAVSLEE 331
FSAT+ V +LA L E
Sbjct: 455 FSATLPPRVANLAKSYLIE 473
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 79 LRQNPDIVIATPGRLID 129
+ Q IV+ATPGRL+D
Sbjct: 372 MSQGAHIVVATPGRLLD 388
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 31.9 bits (69), Expect = 0.12
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 179 VLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLEETRQI 343
V+DEAD++L F +++++ RQ L+SAT VK+ L + +I
Sbjct: 191 VMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLNKPYEI 245
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 168 SRFWCWTKLTGCWMNT 215
SRF+C+TK+ G WM T
Sbjct: 2368 SRFYCYTKMLGEWMFT 2383
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/57 (21%), Positives = 29/57 (50%)
Frame = +3
Query: 426 EAMLAALVCRTFRDRTVVFVQTKRQAHRLHVMLGMLGVRAAELHGALNQPQRLDSLK 596
+A + ++C+T V K H L + L + ++ + +HG+ + + ++S+K
Sbjct: 1335 QAQMFNIICKTVLIDMNVLSAQKEMLHTLWLKLMDVAIKLSSIHGSESMAEVMESIK 1391
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +2
Query: 146 PRFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTML 274
PR G H + + ++ + R +F ++ +I+ P R+T L
Sbjct: 723 PRMGWHDVSMCIIGQPARDAARHFVQRWNYLIQCKKPARKTPL 765
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +2
Query: 158 LHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLEETR 337
L E+L+LDE LD + + IR + T++ + MS+ D + +++
Sbjct: 586 LRDTEILILDEPTSALDPITKNLVMDAIRAHRKGKTTLVITHDMSQINNDELVLVIDKGH 645
Query: 338 QIVR 349
I R
Sbjct: 646 LIQR 649
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -2
Query: 301 DFLAHGGREQHGL--TFRGTLTDD 236
DF+ +GGREQH + R LT+D
Sbjct: 82 DFIVYGGREQHLMFPLLRAGLTND 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,530
Number of Sequences: 5004
Number of extensions: 55123
Number of successful extensions: 259
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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