Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_M21
(1017 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.089
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.089
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.12
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.12
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.12
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.12
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.12
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.12
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 28 0.12
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 25 1.1
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 24 2.5
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 24 2.5
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 3.3
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 3.3
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 23 3.3
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 23 5.8
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 23 5.8
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 7.7
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 7.7
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 28.7 bits (61), Expect = 0.089
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = +3
Query: 126 STRSSQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW 305
S + +R + + ++ +TL + ++ E + A L++ W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 306 G 308
G
Sbjct: 124 G 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 28.7 bits (61), Expect = 0.089
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = +3
Query: 126 STRSSQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW 305
S + +R + + ++ +TL + ++ E + A L++ W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 306 G 308
G
Sbjct: 124 G 124
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.12
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 213 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 308
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.12
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 213 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 308
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.12
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 213 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 308
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.12
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 213 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 308
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.12
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 213 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 308
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.12
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 213 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 308
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 28.3 bits (60), Expect = 0.12
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 183 VNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW 305
++ L ++H N+ E TV L++ W L+W + E+
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEF 102
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 25.0 bits (52), Expect = 1.1
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 174 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG 308
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 23.8 bits (49), Expect = 2.5
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +3
Query: 177 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW 305
+V L+LH ++ E + + W D L WNA E+
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEF 74
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 23.8 bits (49), Expect = 2.5
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +3
Query: 177 IVVNLTLHLRHA---NIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSE 335
+VV L L L N+++ T + L+ W D + W+ E+G T L V SE
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSE 100
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 23.4 bits (48), Expect = 3.3
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +3
Query: 144 RTIGSLPPXSKIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG 308
R +G+ + + L L L N++ T + ++ W D +L WN ++G
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYG 90
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.4 bits (48), Expect = 3.3
Identities = 12/56 (21%), Positives = 26/56 (46%)
Frame = +3
Query: 141 QRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG 308
+R +G+ + LTL ++ ++ E + L++ W D + WN ++G
Sbjct: 39 ERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYG 93
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 23.4 bits (48), Expect = 3.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 255 LQMNWIDKRLSWNAGEWG 308
++ W D +L WN E+G
Sbjct: 86 VEQRWNDYKLKWNPEEYG 103
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 22.6 bits (46), Expect = 5.8
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +3
Query: 216 IRESESTVRILADLQMNWIDKRLSWNAGE 302
I E + T + + +W+D+RL++ G+
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGK 72
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.6 bits (46), Expect = 5.8
Identities = 6/18 (33%), Positives = 12/18 (66%)
Frame = +3
Query: 255 LQMNWIDKRLSWNAGEWG 308
++ +W D +L W+ E+G
Sbjct: 77 VEQSWYDYKLKWDPKEYG 94
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 7.7
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 174 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG 308
++ + L L L N++ T + ++ +W D +L W E+G
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYG 98
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 7.7
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 174 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG 308
++ + L L L N++ T + ++ +W D +L W E+G
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYG 98
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,166
Number of Sequences: 438
Number of extensions: 3186
Number of successful extensions: 36
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33862920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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