Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_M13
         (1386 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0479 + 3606663-3607448                                           34   0.30 
05_03_0597 + 16014809-16015120,16015234-16015398,16015497-160159...    31   2.1  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   8.6  

>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 33.9 bits (74), Expect = 0.30
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +2

Query: 1088 GPPXGXXXAXXPPPF*XKXPPPPP 1159
            GPP G      PPPF    PPPPP
Sbjct: 227  GPPPGMRPGMPPPPFRPGMPPPPP 250


>05_03_0597 + 16014809-16015120,16015234-16015398,16015497-16015957,
            16016057-16016233,16016331-16016679
          Length = 487

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 18/59 (30%), Positives = 20/59 (33%)
 Frame = +3

Query: 978  PPRXXEXXPXLXGGGXXEXPXGGXKKKXFXFXLGGGXXPXGXXXXPXXPPPSEXXXPPP 1154
            PP        L GGG      GG ++    F  GG     G        PPS    PPP
Sbjct: 17   PPFITSFTELLSGGGGDLLGAGGEERSPRGFSRGGARVGGGVPKFKSAQPPSLPLSPPP 75


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 19/49 (38%), Positives = 20/49 (40%)
 Frame = -3

Query: 1099 PXGXXPPPXXKXKXFFFXPPXGXSXKPPPKRXGXFSXXRGGXNPQIPXG 953
            P G  PPP  K       PP G S  PPP   G     +GG  P  P G
Sbjct: 341  PKGPPPPPPAKGPPPP-PPPKGPSPPPPPPPGG----KKGGPPPPPPKG 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,195,956
Number of Sequences: 37544
Number of extensions: 479786
Number of successful extensions: 2883
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2260
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4362392608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)