Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_M13
         (1386 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    32   1.1  
Z49130-7|CAA88972.2|  316|Caenorhabditis elegans Hypothetical pr...    30   3.4  
U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    30   3.4  
L25598-5|AAM15550.1|  113|Caenorhabditis elegans Calpain family ...    29   7.8  
L25598-4|AAV58888.1|  737|Caenorhabditis elegans Calpain family ...    29   7.8  
L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family ...    29   7.8  
L25598-2|AAV58887.1|  780|Caenorhabditis elegans Calpain family ...    29   7.8  
AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical...    29   7.8  
AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA topoisome...    29   7.8  

>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
            protein D1007.7 protein.
          Length = 988

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 29/111 (26%), Positives = 33/111 (29%), Gaps = 1/111 (0%)
 Frame = -2

Query: 1295 GXPPQXKFFFXXNXTHPPG*P-XXXGGPPPXLXXEVFXXXKXKIFXXGGGGXXXFRRGGX 1119
            G PP     F  N   PPG P      PPP +            F         F++G  
Sbjct: 693  GLPPGVPPMFNLNAPPPPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPPPMFQQGFN 752

Query: 1118 XXXPXXPXGXPXPPQXKXKXFFFXPPXGXFPXTPPXKXWXXFXXTWGGXPP 966
               P  P G    P       F  PP G     PP   +       GG PP
Sbjct: 753  AGAPPPPFGRGAGPMSS----FPPPPRGGMHHMPPPPSFRGGRGGHGGPPP 799


>Z49130-7|CAA88972.2|  316|Caenorhabditis elegans Hypothetical protein
            T06D8.9 protein.
          Length = 316

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 21/58 (36%), Positives = 23/58 (39%)
 Frame = +2

Query: 1076 GGGXGPPXGXXXAXXPPPF*XKXPPPPPXKKFXXXSXXKLLXXXXGGAPXFXGVNRGG 1249
            GGG G P G   A  PPP+     PPP   +    S         GGA    G N GG
Sbjct: 195  GGGGGGPGGYPSA--PPPYDDYSKPPPYGFRGDSQSGGGCQGSSSGGASG-SGANNGG 249


>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
            related) protein22 protein.
          Length = 162

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 1076 GGGXGPPXGXXXAXXPPPF*XKXPPPPP 1159
            GGG   P     A  PPP     PPPPP
Sbjct: 28   GGGGCAPAAPACAPPPPPMCGCAPPPPP 55


>L25598-5|AAM15550.1|  113|Caenorhabditis elegans Calpain family
            protein 1, isoform c protein.
          Length = 113

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -1

Query: 1170 NFFXGGGGGXXXQKGGGXXAXXXPXGG 1090
            NFF GGGGG     GGG        GG
Sbjct: 49   NFFGGGGGGGGGGGGGGFGGGNGGFGG 75


>L25598-4|AAV58888.1|  737|Caenorhabditis elegans Calpain family
            protein 1, isoform b protein.
          Length = 737

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -1

Query: 1170 NFFXGGGGGXXXQKGGGXXAXXXPXGG 1090
            NFF GGGGG     GGG        GG
Sbjct: 49   NFFGGGGGGGGGGGGGGFGGGNGGFGG 75


>L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family
            protein 1, isoform d protein.
          Length = 759

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -1

Query: 1170 NFFXGGGGGXXXQKGGGXXAXXXPXGG 1090
            NFF GGGGG     GGG        GG
Sbjct: 49   NFFGGGGGGGGGGGGGGFGGGNGGFGG 75


>L25598-2|AAV58887.1|  780|Caenorhabditis elegans Calpain family
            protein 1, isoform a protein.
          Length = 780

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -1

Query: 1170 NFFXGGGGGXXXQKGGGXXAXXXPXGG 1090
            NFF GGGGG     GGG        GG
Sbjct: 49   NFFGGGGGGGGGGGGGGFGGGNGGFGG 75


>AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical
            protein Y56A3A.27 protein.
          Length = 759

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +2

Query: 1076 GGGXGPPXGXXXAXXPPPF*XKXPPPPPXK 1165
            GGG GPP G        P     PP PP K
Sbjct: 622  GGGGGPPRGPGGGGGGGPTGPPAPPKPPAK 651


>AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA topoisomerase
            III protein.
          Length = 759

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +2

Query: 1076 GGGXGPPXGXXXAXXPPPF*XKXPPPPPXK 1165
            GGG GPP G        P     PP PP K
Sbjct: 622  GGGGGPPRGPGGGGGGGPTGPPAPPKPPAK 651


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,174,018
Number of Sequences: 27780
Number of extensions: 287220
Number of successful extensions: 1369
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3923317606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)