Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_M11
(835 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0373 + 2783596-2784933 32 0.49
07_03_0214 - 15250941-15251181,15251237-15251550 31 0.86
10_08_0424 - 17803984-17805270 31 1.5
12_02_0985 + 25052753-25053691 29 3.5
09_04_0506 - 18188785-18190599 29 3.5
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 4.6
04_01_0041 - 464695-464850,467485-469029 29 6.0
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 8.0
01_01_0796 + 6190931-6192745 28 8.0
>07_01_0373 + 2783596-2784933
Length = 445
Score = 32.3 bits (70), Expect = 0.49
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = -3
Query: 92 EEEKALTKEGMAEAAETTKGTISSMNRS 9
E+++ LTK G + +ET+KG++ S++RS
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRS 178
>07_03_0214 - 15250941-15251181,15251237-15251550
Length = 184
Score = 31.5 bits (68), Expect = 0.86
Identities = 22/62 (35%), Positives = 27/62 (43%)
Frame = -2
Query: 675 GFNPGANSF*YGVQGIDGNGC*VWGGWCMEFGDLMIGLM*PRSPGEGGLMHKGETANSNA 496
G GA YGV + +G VWGG G M L +P EG M + E + A
Sbjct: 54 GIGSGATVTGYGVPDMGPSGGVVWGGGAAR-GAAMTRLGRLGAPMEGSSMERREVSMGTA 112
Query: 495 RG 490
RG
Sbjct: 113 RG 114
>10_08_0424 - 17803984-17805270
Length = 428
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/68 (32%), Positives = 29/68 (42%)
Frame = +1
Query: 550 SRLHQPDHQIPEFHTPTTPDLTSISINPLNAVLEGVRAGVKASGCHQRLHQRISPPRHWA 729
S L DH P TPTTP T +P+ + VR + H + +S P +
Sbjct: 24 SALPDVDHPPPPASTPTTPASTR---SPILDLQLAVRGEADPARIHSLVATALSRPDDYP 80
Query: 730 WLKGFRPL 753
L G RPL
Sbjct: 81 RLHGSRPL 88
>12_02_0985 + 25052753-25053691
Length = 312
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -3
Query: 524 IRARPPIVMREDEGVASTLTPSTVTSAVAQQRSTVTGILRLGAEGKTTASRLTRYASR*P 345
+ +R + +R D S+ + +T S A+ S + GAEG TTAS LT S P
Sbjct: 127 VSSRTGLFLRGDCHRNSSASNATNCSIPAETMSRMVPTASCGAEGNTTASALTCVTSTSP 186
>09_04_0506 - 18188785-18190599
Length = 604
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 566 PIIKSPNSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPVVIRGSISV-SHPLVTGHG*RG 742
P+ PN +H PPQ P + P P + PG +G + P+V G+G G
Sbjct: 120 PVPDRPNPVHLPPQPQPPVAAAPPPPPHNQIQPGGGDGFHRQGGGNYGGGPIVVGNGGGG 179
Query: 743 FAP 751
P
Sbjct: 180 DGP 182
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.1 bits (62), Expect = 4.6
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +1
Query: 283 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWATADVT 456
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 457 VEGVNVLATPSSSRITIGGLALMHQ 531
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 244 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 420
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 421 TVD 429
+D
Sbjct: 100 PLD 102
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +1
Query: 235 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 415 PVTVDLCWATADVTVEGVNVLATPSS 492
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
>01_01_0796 + 6190931-6192745
Length = 604
Score = 28.3 bits (60), Expect = 8.0
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 568 DHQIPEFHTPTTPDLTSISINPLNAVLEGVRAGVKASGCHQRLHQRISP-PRHWAWLKG 741
D +FH TP + ++ L++ +E A + Q L +RI+P R AWLKG
Sbjct: 51 DQNRSKFHAVGTPTVQAVVDAALSSDVEEAAAEARPVADEQ-LMERIAPLERELAWLKG 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,162,735
Number of Sequences: 37544
Number of extensions: 514016
Number of successful extensions: 1404
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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