Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_M10
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.86 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.86 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   8.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.0  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 661 TTSQRWSRGSTPRSLSTSRANNHHIKP 581
           T +Q WSRG+T  SL  S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 661 TTSQRWSRGSTPRSLSTSRANNHHIKP 581
           T +Q WSRG+T  SL  S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 728 LVLGLLFILFTFFRVTVEEQ 669
           ++ G+LF+LF+F R   + Q
Sbjct: 17  VIFGVLFVLFSFLRTRTKLQ 36


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 728 LVLGLLFILFTFFRVTVEEQ 669
           ++ G+LF+LF+F R   + Q
Sbjct: 17  VIFGVLFVLFSFLRTRTKLQ 36


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 624 RGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 722
           R +LPR ++  +   LF Y  P  SE ++  ++
Sbjct: 603 RLLLPRGKKEGMPFQLFLYVSPVSSEYNQYNSR 635


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 624 RGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 722
           R +LPR ++  +   LF Y  P  SE ++  ++
Sbjct: 603 RLLLPRGKKEGMPFQLFLYVSPVSSEYNQYNSR 635


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 2   TGFFFASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNF 163
           T   FAS   YT   +   S T+  G+  +AL+   +T+ L  +  L + N+N+
Sbjct: 225 TSSTFASDPRYTTFTINGESFTLQSGIFGMALS--PLTQNLYYSA-LSSHNLNY 275


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +3

Query: 438 VLDPAQDHQPITEASYVNIPVIALCNTDSP 527
           ++DP ++++   E   + IP++   +   P
Sbjct: 167 IVDPVEENETYDEFDTIRIPIVRSLSKSPP 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 250,833
Number of Sequences: 438
Number of extensions: 5757
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)