Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_M09
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 132 3e-31
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 129 2e-30
10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314 31 1.5
02_05_0425 - 28845707-28846189,28846262-28846403,28846496-288469... 29 4.6
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 6.1
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 8.0
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 8.0
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 8.0
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 132 bits (320), Expect = 3e-31
Identities = 63/104 (60%), Positives = 78/104 (75%)
Frame = +3
Query: 51 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 230
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 231 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIA 362
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IA
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIA 104
Score = 128 bits (310), Expect = 4e-30
Identities = 58/95 (61%), Positives = 73/95 (76%), Gaps = 1/95 (1%)
Frame = +2
Query: 350 YAYCGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRF 529
+A GR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+
Sbjct: 101 HAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRY 160
Query: 530 VDIAIPCNTKSSHSIGLMWWLLAREVLRLRG-VLP 631
VDI IP N K +SIG ++WLLAR VL++RG +LP
Sbjct: 161 VDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILP 195
Score = 51.2 bits (117), Expect = 1e-06
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Frame = +3
Query: 642 RWDVVVDLFFYRDPEESEKDEQQAKEQAVVQLTXSXAPGHEXW-XEXWS 785
+WDV+VDLFFYRDPEE+++ E++A Q +T AP E W + W+
Sbjct: 198 KWDVMVDLFFYRDPEEAKEQEEEAPAQDFAAITDYTAP--EQWSADQWT 244
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 129 bits (312), Expect = 2e-30
Identities = 60/93 (64%), Positives = 73/93 (78%)
Frame = +3
Query: 84 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 263
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 264 IENPADVFVISSRPFGQRAVLKFAAHTGATPIA 362
IENP D+ V S+RP+GQRAVLKFA +TGA IA
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIA 104
Score = 128 bits (310), Expect = 4e-30
Identities = 58/95 (61%), Positives = 72/95 (75%), Gaps = 1/95 (1%)
Frame = +2
Query: 350 YAYCGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRF 529
+A GR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+
Sbjct: 101 HAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRY 160
Query: 530 VDIAIPCNTKSSHSIGLMWWLLAREVLRLRG-VLP 631
VDI IP N K SIG ++WLLAR VL++RG +LP
Sbjct: 161 VDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILP 195
Score = 46.0 bits (104), Expect = 4e-05
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Frame = +3
Query: 642 RWDVVVDLFFYRDPEESEKDEQQAKEQAVV-----QLTXSXAPGHEXWXEXW 782
+WDV+VDLFFYRDPEE++ EQ+ +E A+V + AP + W W
Sbjct: 198 KWDVMVDLFFYRDPEEAK--EQEEEEAALVAPDYGAVAEYAAPAADTWGGEW 247
>10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314
Length = 368
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 667 NKSTTTSQRWSXGKHTTKPQHFTCQQPPHQTNRVGRLGVAW 545
N S+T+S WS K T KP FT P + + + AW
Sbjct: 321 NSSSTSSSIWSTSKWTLKPDAFTLPLPLPLFDNIPKPIAAW 361
>02_05_0425 -
28845707-28846189,28846262-28846403,28846496-28846971,
28848817-28848848,28849429-28849572,28849770-28849841,
28850281-28850296
Length = 454
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/78 (24%), Positives = 32/78 (41%)
Frame = -3
Query: 747 YXWLAVPQPVPWLVVHPFHFLQGHGRRTNQPQHPSAGXRGSTPRSLNTSRANNHHIKPIE 568
Y AVP P + H F+ L P PS G S + + S +N ++ E
Sbjct: 354 YPSTAVPDPSDHVWAHHFNLLNSAAAGPAAPYDPSRGTTSSRDEA-SVSISNASDLEATE 412
Query: 567 WEDLVLHGIAMSTNLSGE 514
W + G++++ G+
Sbjct: 413 WVEQDEPGVSITIREFGD 430
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 151 TFSAPRWVVAASILVTSSSLRASTSNP 71
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -3
Query: 333 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 178
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 158 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 265
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.3 bits (60), Expect = 8.0
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +2
Query: 104 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 283
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 284 VRHLITALRSACCTEVCR 337
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,752,212
Number of Sequences: 37544
Number of extensions: 570566
Number of successful extensions: 1425
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1424
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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