Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_M09
         (836 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.65 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   4.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   8.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   8.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   8.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 409 ECSLDLVSKSTWCETSAIGVAP 344
           E S+DLV  ST+CE   + V+P
Sbjct: 260 ERSVDLVVTSTYCEPQVVIVSP 281


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +1

Query: 541 YPMQHQVFPLYWFD-VVVVGT*SVEASWCASPXTSAGMLWLICSSTVTLKKVKRMNNKPR 717
           +P  ++++P Y+FD  V+    +++ S  +S  T    +     +T    K  R  N P 
Sbjct: 159 FPAIYEIYPNYFFDSSVIEEAQNLKMSRGSSVVTGMNNIETYIVNTNYSSKYMREYNDPE 218

Query: 718 NRLWY 732
            +L Y
Sbjct: 219 YKLDY 223


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +1

Query: 541 YPMQHQVFPLYWFD-VVVVGT*SVEASWCASPXTSAGMLWLICSSTVTLKKVKRMNNKPR 717
           +P  ++++P Y+FD  V+    +++ S  +S  T    +     +T    K  R  N P 
Sbjct: 159 FPAIYEIYPNYFFDSSVIEEAQNLKMSRGSSVVTGMNNIETYIVNTNYSSKNMREYNDPE 218

Query: 718 NRLWY 732
            +L Y
Sbjct: 219 YKLDY 223


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +3

Query: 9   FASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNF-QMETYVYKR 185
           FAS   YT   +   S T+  G+  +AL+   +T+ L  +  L + N+N+   E +V  +
Sbjct: 229 FASDPRYTTFTINGESFTLQSGIFGMALS--PLTQNLYYSA-LSSHNLNYVNTEQFVKSQ 285

Query: 186 -RADGTH 203
            +A+  H
Sbjct: 286 YQANNVH 292


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 658 LICSSTVTLKKVKRMNNKPRNRLWYS*PXVXLLVMXTGXXTGAXGSWA 801
           L+C +   ++K++R  N     L  S   V LLVM         G+W+
Sbjct: 61  LVCVAVFLVRKLRRPCNYLLVSLAVSDLCVALLVMPMALLYEISGNWS 108


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +2

Query: 431 VLDPAQDHQPITEASYVNIPVIALCNTDSP 520
           ++DP ++++   E   + IP++   +   P
Sbjct: 167 IVDPVEENETYDEFDTIRIPIVRSLSKSPP 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,885
Number of Sequences: 438
Number of extensions: 5470
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)