Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_M08
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 168 7e-43
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 54 3e-08
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 30 0.45
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 2.4
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 2.4
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 5.5
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 5.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 7.3
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 7.3
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 25 9.6
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 25 9.6
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 168 bits (409), Expect = 7e-43
Identities = 78/140 (55%), Positives = 104/140 (74%)
Frame = +1
Query: 295 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 474
K+ YF K+ L ++Y F+V DNV SQQM +R LRG++ ++MGKNTM+R+A++ +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 475 DNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 654
++ P LE+LLP ++GNVGFVFT DL EVR+ ++ N + APARP AIAPL V +PA NTG
Sbjct: 68 NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127
Query: 655 LGPEKTSFFQALSIPTKIQR 714
+ P KTSFFQAL IPTKI R
Sbjct: 128 MEPGKTSFFQALGIPTKITR 147
Score = 34.3 bits (75), Expect = 0.021
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +3
Query: 696 PYQDSKGTIEIINDVHILKPGXKVGXSEA 782
P + ++GTIEI +DVH++ KVG SEA
Sbjct: 142 PTKITRGTIEITSDVHLVSKDAKVGPSEA 170
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 53.6 bits (123), Expect = 3e-08
Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Frame = +1
Query: 232 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 411
K RS TL++ ++ K+ F + Q LD + +I N+ + +++IR +
Sbjct: 3 KSRRSKVLTLAQTEKKGHEG-KAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWK 61
Query: 412 GSSIVLMGKNTMMRKAI-----KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLL 576
GS I MGK +M KA+ ++H +N L KLL G VG +FT EV
Sbjct: 62 GSRI-FMGKTKVMAKALGHTPEEEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YF 116
Query: 577 ENKVQAP-ARPGAIAPLSVVIPA 642
E+ VQ AR GA+AP + VIPA
Sbjct: 117 ESFVQNDFARAGAVAPFTHVIPA 139
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 29.9 bits (64), Expect = 0.45
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 425 CSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLAS 532
CS EKT C++ K+ T+ +PS CC ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 491 RAGLLSRWSLMALRIIVFFPMSTILEPR 408
+A W LM + +++F + ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -1
Query: 569 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 444
L +T +S + PTLP + + S +G+LSR + + ++ I
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 5.5
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -1
Query: 665 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 495
+G PV + + G++ P AGAW L N L T + +NT P PL G F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194
Query: 494 SRAGL 480
S L
Sbjct: 195 SEEEL 199
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 5.5
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 584 LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 423
LFSN + R + R+ T L+ GN++ + W+L+A I F +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/66 (22%), Positives = 29/66 (43%)
Frame = +2
Query: 461 SKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFP 640
S T T+ + C TS + L + +P ++ + TNC T + + P+ +
Sbjct: 518 SSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTIS 576
Query: 641 PTTPAS 658
+TP +
Sbjct: 577 SSTPVT 582
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 29 EHCNRPKERYLIEGDPLKSKIVI 97
EH RPK R G+PLK K+ +
Sbjct: 1728 EHEERPKNRKETLGNPLKGKVFL 1750
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 9.6
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 343 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA 489
K IVGA NVGS + +S + IV++ N +KA + +D N A
Sbjct: 22 KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = -3
Query: 237 KFKDKTKRTTFVRDKFKMALQ*GVTNLKFEQTVLSMNELSFQENRS*ITIFDLSGSPS 64
K + + + + D + L + N+ + MN+L +ENR+ I D+SG+P+
Sbjct: 726 KAESPQQNSDYANDSVQHLLDFDINNMDETAIHMLMNQLEKKENRTFIK-KDISGTPN 782
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,487,108
Number of Sequences: 5004
Number of extensions: 72951
Number of successful extensions: 196
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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