Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_M08
         (809 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   221   6e-58
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    48   1e-05
Z77662-3|CAB01194.1|  284|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z77662-4|CAB01193.1|  248|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    28   6.9  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  221 bits (539), Expect = 6e-58
 Identities = 99/149 (66%), Positives = 123/149 (82%)
 Frame = +1

Query: 268 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 447
           M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60

Query: 448 MRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLS 627
           +RKA++ HL  NP+LEKLLPHI  NVGFVFT+ DL E+R KLLEN+  APA+ GAIAP  
Sbjct: 61  IRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCD 120

Query: 628 VVIPAHNTGLGPEKTSFFQALSIPTKIQR 714
           V +P  NTG+GPEKTSFFQAL IPTKI R
Sbjct: 121 VKLPPQNTGMGPEKTSFFQALQIPTKIAR 149



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +3

Query: 696 PYQDSKGTIEIINDVHILKPGXKVGXSEA 782
           P + ++GTIEI+NDVH++K G KVG SE+
Sbjct: 144 PTKIARGTIEILNDVHLIKEGDKVGASES 172


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 2/135 (1%)
 Frame = +1

Query: 241 RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 420
           R    +L+++ ++ K T K+N   ++   +D+Y   FI    N+ S +   IR   + +S
Sbjct: 6   RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64

Query: 421 IVLMGKNTMMRKAIKDHLDNNPA--LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQA 594
               GKN ++  A+     +  A  L K    +KG  G +FT     EV  +  E   + 
Sbjct: 65  RFFFGKNNVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEASEED 124

Query: 595 PARPGAIAPLSVVIP 639
            AR G +A  +VV+P
Sbjct: 125 YARVGDVATETVVLP 139


>Z77662-3|CAB01194.1|  284|Caenorhabditis elegans Hypothetical
           protein F47B8.3 protein.
          Length = 284

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -3

Query: 168 VTNLKFEQTVLSMNELSFQENRS*ITIFDLSGSPSIRYLSLGRLQCST 25
           V  L+ EQT+ ++  LS  +N+   TIFD+S    IR++S     C T
Sbjct: 209 VNYLEDEQTLSTIQSLS--DNQIDYTIFDVSTDSEIRFISKALSDCET 254


>Z77662-4|CAB01193.1|  248|Caenorhabditis elegans Hypothetical
           protein F47B8.4 protein.
          Length = 248

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -3

Query: 168 VTNLKFEQTVLSMNELSFQENRS*ITIFDLSGSPSIRYLSLGRLQCST 25
           V  L+ EQT+ ++  L+  +N+   TIFD+S    IR++S     C T
Sbjct: 173 VNYLEDEQTLSTIQSLN--DNQIEYTIFDVSTDSEIRFISKALSDCET 218


>Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical
           protein T06E6.10 protein.
          Length = 249

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/56 (23%), Positives = 21/56 (37%)
 Frame = +2

Query: 416 PVSCSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRT 583
           P  C+  +   C      T   ++P+  C H +  T   CSP +        C+ T
Sbjct: 109 PAGCAMVRPSGCMDSPTMTGCELKPT--CIHVNACTTTKCSPGKKCALHTVQCFTT 162


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 223 LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 336
           L+ K   S ++ +SR+ +EDK +  SN+++K  QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 632 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 522
           TT      P  AG WT+ +N ++R  TR P    +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,454,420
Number of Sequences: 27780
Number of extensions: 419104
Number of successful extensions: 1162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)