Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_M06
(828 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 254 6e-68
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 254 6e-68
06_03_0543 + 21967787-21970261 29 4.5
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 6.0
09_06_0103 + 20873310-20873382,20873530-20873735 29 6.0
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 7.9
05_03_0130 - 8770354-8770678,8770799-8770992,8771091-8771203,877... 28 7.9
04_04_0730 + 27618981-27619143,27619237-27619349,27619695-276198... 28 7.9
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 254 bits (622), Expect = 6e-68
Identities = 120/208 (57%), Positives = 150/208 (72%), Gaps = 1/208 (0%)
Frame = +2
Query: 92 STRKMSPKCLLQPPI-LGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAI 268
S R+ + +L + LG K ME YVYKRR DG ++INL +TWEKL LAAR +VAI
Sbjct: 13 SQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAI 72
Query: 269 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 448
ENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 73 ENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPR 132
Query: 449 QDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGV 628
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG
Sbjct: 133 TDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGT 192
Query: 629 LPRDQRWDVVVDLFFYRDLKKVKRMNNK 712
+ +WDV+VDLFFYRD ++ K +
Sbjct: 193 ILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
Score = 31.9 bits (69), Expect = 0.64
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 85 LALNEEDVTKMLAATTHLGAENVNFQ 162
L+ E+D+ MLAA HLG +N +FQ
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQ 37
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 254 bits (622), Expect = 6e-68
Identities = 117/192 (60%), Positives = 145/192 (75%)
Frame = +2
Query: 137 LGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 316
LG K ME YVYKRR+DG ++INL +TWEKL LAAR +VAIENP D+ V S+RP+GQ
Sbjct: 29 LGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQ 88
Query: 317 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 496
RAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP
Sbjct: 89 RAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPT 148
Query: 497 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFY 676
IA C+TDSP+R+VDI IP N K +SIG ++WLLAR VL++RG + +WDV+VDLFFY
Sbjct: 149 IAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFY 208
Query: 677 RDLKKVKRMNNK 712
RD ++ K +
Sbjct: 209 RDPEEAKEQEEE 220
Score = 34.7 bits (76), Expect = 0.091
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 52 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQ 162
++A G L+ E+DV MLAA HLG +N +FQ
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQ 37
>06_03_0543 + 21967787-21970261
Length = 824
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +2
Query: 581 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF---FYRDL 685
L W++L RE +LRGV P + ++++ + F YR+L
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHFRRYTYREL 509
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 152 TFSAPRWVVAASILVTSSSLRASTSNP 72
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +1
Query: 331 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 438
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 335 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 180
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>05_03_0130 -
8770354-8770678,8770799-8770992,8771091-8771203,
8771320-8771482
Length = 264
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 537 TLLSHATPSLPTLSV*CGGCWHVKC*GFVVCF--PVT 641
++++ +PS+ + CG C+ VKC G C PVT
Sbjct: 71 SMIAAGSPSIYKSGLGCGSCYQVKCSGNSACSGNPVT 107
>04_04_0730 +
27618981-27619143,27619237-27619349,27619695-27619888,
27620141-27620465
Length = 264
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 537 TLLSHATPSLPTLSV*CGGCWHVKC*GFVVCF--PVT 641
++++ +PS+ + CG C+ VKC G C PVT
Sbjct: 71 SMIAAGSPSIYKSGLGCGSCYQVKCTGNSACSGNPVT 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,895,445
Number of Sequences: 37544
Number of extensions: 544682
Number of successful extensions: 1425
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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