Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_M04
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    29   0.62 
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    29   0.82 
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    29   0.82 
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    27   3.3  
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    26   5.8  

>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 10/22 (45%), Positives = 19/22 (86%)
 Frame = +1

Query: 358 RAQILYRLEQYQDCYNLYRDLL 423
           +AQ+L +LE+YQ+  N+++DL+
Sbjct: 506 KAQVLEQLEKYQESLNIWKDLI 527


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 93  YERALKAAGKILQIAPNEQKAFHCKVVCFLQLHNFKEALATLTN 224
           Y+ AL  A + +  +P+E   + C    +L L +FK AL  L +
Sbjct: 321 YDLALICAKRAVHASPSEFATWACLADVYLHLEDFKSALLALNS 364


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 149 ESISLQSGMLSPTPQLQGGSSDINQCQE 232
           E++ L +G L P P+ + G SDIN+ +E
Sbjct: 901 EALDLINGFLQPNPERRLGFSDINEIKE 928


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 22/83 (26%), Positives = 30/83 (36%)
 Frame = +1

Query: 370 LYRLEQYQDCYNLYRDLLKNTTDEYEDERKXXXXXXXXXXXXXXPTSELPQFDENTYELA 549
           L+R   YQD Y  Y + L+   D  E   K              P   L   D N   + 
Sbjct: 233 LFRQGNYQDAYEKYSEALQIDPDNKETVAKLYMNRATVLLRLKRPEEALSDSD-NALAID 291

Query: 550 YNSGSTLAMRGKYNEALSVLKRA 618
            +    L +R K +EAL   + A
Sbjct: 292 SSYLKGLKVRAKAHEALEKWEEA 314


>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +3

Query: 81  RADDYERALKAAGKILQIAPNEQKAFHCKVVCFLQLHNFKEALATLTNA 227
           +++DY  A+  A K ++  P   KA+  +    + +   KEA+     A
Sbjct: 51  KSEDYGLAINDASKAIECDPEYAKAYFRRATAHIAIFQPKEAVGDFRKA 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,637
Number of Sequences: 5004
Number of extensions: 47404
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)