Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_M03
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    27   3.4  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   3.4  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    27   4.4  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   5.9  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    26   7.8  
SPCC594.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   7.8  

>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 245 INDIPIIKFLFSPTSSLNVSISMSTHSFPTRLKL 346
           IND+ ++K L  P  +LNV     T S  + +K+
Sbjct: 124 INDVEVVKVLLEPDFNLNVDAICETLSKDSAIKV 157


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
 Frame = -2

Query: 181 KEGRKVGXRSLLAMEA--ESKVGSYFESCLGAITLRVWAPFS*GRSTHGN*LENSP 20
           ++G   G    L  ++   S  GSY  S  GA      AP S  R    N L N P
Sbjct: 104 RQGNNTGANGALFSQSTNSSNSGSYRNSVTGATLPNAHAPHSQNRRRRSNHLNNPP 159


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 320 HSFPTRLKLSSKRTQIVRIP 379
           H  P R++LSS+  QI RIP
Sbjct: 5   HGTPQRIQLSSRAIQICRIP 24


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 209 LAHFCFHLYVEPINDIPIIKFLFSPTSSLNVSISMSTHSFPTRLKLSSKR 358
           L  F +   +E +  +  I FL+ P    N  +++ +HS  + LKL+  R
Sbjct: 783 LTLFAYKFPLEVVAHLYDILFLYGPGILFNFGLALLSHSQESLLKLNMDR 832


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +1

Query: 589 YDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERXSIPSHLIDLH 750
           +D  +  SS+   + IH  N++     S+H E   L   K    S+P   ++LH
Sbjct: 195 WDTKKVKSSNRNFVTIHELNEHLKNVNSKHSEIDDLLPDKRSIVSLPPSTLNLH 248


>SPCC594.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 104 MFGCYNAEGLGAILIREI 51
           +FGC++A GLG  L  EI
Sbjct: 64  LFGCWSANGLGIALAYEI 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,706,731
Number of Sequences: 5004
Number of extensions: 80908
Number of successful extensions: 222
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)