Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_M03
(848 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0874 + 12017069-12018051,12018137-12018316,12018421-120186... 31 1.2
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284... 30 2.0
04_04_0577 + 26349205-26349669,26350384-26350482,26350887-263510... 30 2.7
02_01_0753 - 5586705-5586766,5587864-5588056,5588154-5588423,558... 29 3.5
12_02_0674 - 21745321-21746223,21746229-21747608 29 4.7
12_02_1252 - 27346314-27347327 29 6.2
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381... 28 8.2
02_05_1304 + 35581172-35581345,35582504-35582748,35583148-355838... 28 8.2
02_01_0325 - 2208480-2208674,2208772-2210609,2210980-2211109,221... 28 8.2
>03_02_0874 +
12017069-12018051,12018137-12018316,12018421-12018600,
12018718-12018797,12018999-12019259,12019360-12019474,
12019631-12019855,12020840-12020849
Length = 677
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +1
Query: 19 MGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLYFRPPLPKDSXFRPSFLPYRLSP 195
MG I HG ++R+A P AL H M + L PP P S P+ +P SP
Sbjct: 26 MGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPPPPPPSSSSPT-VPAAHSP 83
>04_04_0465 +
25427065-25427113,25428099-25428227,25428387-25428479,
25428681-25428953,25429037-25429288,25429735-25430118,
25430243-25430483,25431986-25432736
Length = 723
Score = 30.3 bits (65), Expect = 2.0
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Frame = +1
Query: 94 HPNMTRNMTRLYFRPPLPKDSXFRPSFLPYRLSPS-DEV-----LGTFLFSSLCRAYKRH 255
HP + R + PPLP S PY+L P DE+ GTFL S R
Sbjct: 65 HPVPRHHRKRPHVAPPLPPPSSSERQVAPYQLFPRIDELEIEIAAGTFLKQSQVRIMGAG 124
Query: 256 PNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQAN 360
+ + P + + V+ + L Q ++T A++ +N
Sbjct: 125 SSLQDPEKTTVTVDLVPL---GQKFDRTSALLTSN 156
>04_04_0577 +
26349205-26349669,26350384-26350482,26350887-26351064,
26351900-26352087,26352335-26352373
Length = 322
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 217 FLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANR 369
F + R Y R+ ++ PF PD+ V+ I+L + S L + A I +R
Sbjct: 191 FDMDDVVRKYIRYTLNEKPFNPDVVVDLIHLRKASMLEDAEVAEILNEISR 241
>02_01_0753 -
5586705-5586766,5587864-5588056,5588154-5588423,
5588522-5588687,5589049-5589209,5590065-5590181,
5590269-5590549,5590750-5590833,5591100-5592542,
5593167-5593575
Length = 1061
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Frame = -2
Query: 481 SRLMSGMLSKGRKLSLR*FYAEFLKICGQ--QCTASRDPN-----DLRSLG*QLESCWK 326
S ++ GM+ G K LR YA+F ++ Q + A D N L SL Q ES WK
Sbjct: 482 STMLKGMIESGTKQGLREGYAQFTEVLSQKTKVIAPDDSNLSKDEILSSLQTQEESIWK 540
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 281 PTSSLNVSISMSTHSFPTRLKLSSKRTQIVRIPT--GGTLLSAYFQKLSIKSTKAQFS 448
PT++ +S T PT + T +IPT G + LS K+S S QFS
Sbjct: 621 PTTARTGELSTPTDKIPTTTRAGDLSTATSKIPTAPGTSELSTTTSKISSTSCAGQFS 678
>12_02_1252 - 27346314-27347327
Length = 337
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -2
Query: 745 GL*DEMEWKXAPFSSVPRQRPHHAEIGQTQSSHCRHEFVMVSDGTK 608
GL DEM W P+S+ HA + +H + + DG K
Sbjct: 261 GLADEMTWPQPPYSAFREDSFGHAVLDIKNRTHAYYAWYRNDDGAK 306
>11_04_0340 -
16536571-16536705,16536820-16536951,16537265-16538106,
16538480-16538940,16539032-16540314,16540423-16541627,
16541857-16542157
Length = 1452
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 321 TAFQQDSSCHPSERKSFGS--RLAVHCCPHIFK 413
T FQ SS ++ F S +L + CCPHI K
Sbjct: 899 TPFQSFSSFRTEQKSWFPSLNKLTIGCCPHISK 931
>02_05_1304 +
35581172-35581345,35582504-35582748,35583148-35583829,
35583908-35584262,35584558-35584649,35584889-35585083,
35585167-35585840,35586134-35586224
Length = 835
Score = 28.3 bits (60), Expect = 8.2
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -2
Query: 577 LHTQTSWEDDLYCRKLADIS*SGQKLRQWH 488
L+ +TSWE + +C+ L + + ++ + WH
Sbjct: 164 LYAETSWEKESWCKALRLAATADKEKKNWH 193
>02_01_0325 -
2208480-2208674,2208772-2210609,2210980-2211109,
2211231-2211270,2211409-2211531,2211940-2212030,
2212396-2212480,2212565-2212720,2212797-2212853,
2212940-2213110,2213313-2213330,2213479-2213551,
2213754-2213839,2214348-2214466,2214542-2214641
Length = 1093
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -1
Query: 470 VWHAFQGPKIEPSLILC*VFENMRTAVYRQSGSERFAFAWMTA*VLLESCEYSLRL 303
VW + P++I +F MR VY+ + R AF+ +LLE+ EY L L
Sbjct: 101 VWSIDSLGRTNPAIIRAFLFRKMRKKVYKSNIILRNAFS-----MLLETAEYLLNL 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,679,961
Number of Sequences: 37544
Number of extensions: 542773
Number of successful extensions: 1404
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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