Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_M03
         (848 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL365181-9|CAI13053.1|  370|Homo sapiens G patch domain containi...    31   4.0  
AF090139-1|AAC35985.1|  105|Homo sapiens immunoglobulin heavy ch...    31   5.3  
AF090138-1|AAC35984.1|  105|Homo sapiens immunoglobulin heavy ch...    31   5.3  

>AL365181-9|CAI13053.1|  370|Homo sapiens G patch domain containing
           4 protein.
          Length = 370

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
 Frame = -2

Query: 736 DEMEWKXAPFSSVPRQRPHHAE--IGQTQSSHCRHEFVMVSDGTKQTERDRMEFGLHTQT 563
           +E E   +  +    + P HAE  I +++    RH+   VSD  + T +   +      T
Sbjct: 213 EEEEATASERNDADEKHPEHAEQNIRKSKKKKRRHQEGKVSDEREGTTKGNEKEDA-AGT 271

Query: 562 SWEDDLYCRKLADIS*-SGQKLRQWHHASRLMSGMLSKGRK 443
           S   +L  R+  + S   G+K ++WHH    M G+L +G K
Sbjct: 272 SGLGELNSREQTNQSLRKGKKKKRWHHEEEKM-GVLEEGGK 311


>AF090139-1|AAC35985.1|  105|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 105

 Score = 31.1 bits (67), Expect = 5.3
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 15  HNGEFSNQF-PWVDLPYENGAQTLSVIAPKHDSKYDPTLLS 134
           H G FSN F  W+  P   G + +  I P   + Y+P+L S
Sbjct: 25  HGGSFSNYFWSWIRQPPGKGLEWIGEINPSGRTDYNPSLKS 65


>AF090138-1|AAC35984.1|  105|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 105

 Score = 31.1 bits (67), Expect = 5.3
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 15  HNGEFSNQF-PWVDLPYENGAQTLSVIAPKHDSKYDPTLLS 134
           H G FSN F  W+  P   G + +  I P   + Y+P+L S
Sbjct: 25  HGGSFSNYFWSWIRQPPGKGLEWIGEINPSGRTDYNPSLKS 65


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,483,972
Number of Sequences: 237096
Number of extensions: 2904235
Number of successful extensions: 6328
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6328
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)