Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_M03
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   8.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   8.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   8.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   8.2  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 131 K*SRVIFRVMFGCYN 87
           K SR++F V F C+N
Sbjct: 406 KYSRIVFPVCFVCFN 420


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 131 K*SRVIFRVMFGCYN 87
           K SR++F V F C+N
Sbjct: 406 KYSRIVFPVCFVCFN 420


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +1

Query: 391 TAVRIFSKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQ 528
           T++    K Q+     S+   W A   ++L++  +++IF P   Y+
Sbjct: 378 TSLVSLDKKQYTWRHTSVLIGWSAFLCISLVYIIMLIIFIPRNIYE 423


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 131 K*SRVIFRVMFGCYN 87
           K SR++F V F C+N
Sbjct: 344 KYSRIVFPVCFVCFN 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,710
Number of Sequences: 438
Number of extensions: 5442
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)