Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_M02
         (856 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0013 - 355103-355435                                             29   3.6  
02_05_0040 + 25341418-25341810                                         29   4.7  
12_02_0954 - 24757417-24758214                                         29   6.2  
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031...    29   6.2  
02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,369...    29   6.2  
01_01_0608 - 4513604-4513701,4513790-4513919,4514027-4514116,451...    28   8.3  

>09_01_0013 - 355103-355435
          Length = 110

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
 Frame = +1

Query: 220 RLGVQQPALYWHFXEQAGAARRTG----RSHAGGESYAFGAESRRRLALISDREC 372
           RLG Q+    WH   Q  AARR G    ++  GG+  A  A  R     +    C
Sbjct: 56  RLGQQRRRATWHSFRQGTAARRDGSAVVKAVGGGDGEAMAAVRRTEATAMRPSTC 110


>02_05_0040 + 25341418-25341810
          Length = 130

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 401 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 303
           RRAAP   CG S+   S  +RR  AP    S P
Sbjct: 74  RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106


>12_02_0954 - 24757417-24758214
          Length = 265

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -1

Query: 457 TLERPRPAARAHGAIVLAVGEQRLPEAAG---IPDQK*APVVVGSRH 326
           T +RPRP+  A  A+  A+       A+G      Q+ AP VV S+H
Sbjct: 100 TRKRPRPSRPARAAVAAAIAAAAAASASGSQIAAQQQQAPPVVMSQH 146


>08_02_1480 +
           27401923-27402158,27402847-27402982,27403119-27403168,
           27403810-27403813,27404394-27404494,27405084-27406305
          Length = 582

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = -3

Query: 365 RSEMSASRRRLSAPNAYDSPPAWLRPVRRAAPACSLKCQ*SAGC*TPNRSASLRVVRPST 186
           RS  S+S    S+P A  SPP W++ +R    A S     S+       SAS      + 
Sbjct: 6   RSSTSSSSSASSSPRAPSSPPPWVQ-LRSLLVASSSSSSSSSSLAASGNSASPAAAAAAA 64

Query: 185 PTSFN 171
             SF+
Sbjct: 65  SASFS 69


>02_01_0509 +
           3694689-3695683,3695799-3695946,3696864-3696943,
           3697214-3698062,3698193-3698337,3698426-3698677,
           3698780-3699089,3699415-3699524
          Length = 962

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 24/75 (32%), Positives = 34/75 (45%)
 Frame = +1

Query: 268 AGAARRTGRSHAGGESYAFGAESRRRLALISDRECPQLQAGAARLPPAQWHHVLELQVAA 447
           A AA R G  HA   +   G ES  RLA  +D    Q Q   A++   + + +  L V A
Sbjct: 101 APAASRRGAGHAVLANLELGIESIERLA--ADAASAQAQQRDAKIRSLR-NSIRLLSVVA 157

Query: 448 ALEYPSRGPSLRVPS 492
           +L  P + P    P+
Sbjct: 158 SLHAPPQPPRHAAPT 172


>01_01_0608 -
           4513604-4513701,4513790-4513919,4514027-4514116,
           4514225-4514330,4514442-4514542,4514678-4514773,
           4514860-4514959,4515133-4515269,4515563-4515661,
           4515740-4515937,4516058-4516235,4516635-4516690,
           4516781-4516933,4517248-4517340,4517422-4517523,
           4517609-4517650,4517812-4517855,4518087-4518186,
           4518323-4518394,4518499-4518621,4519309-4519452
          Length = 753

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 22/77 (28%), Positives = 31/77 (40%)
 Frame = +1

Query: 127 TKLQPNTVIRAALDLLNEVGVDGLTTRKLAERLGVQQPALYWHFXEQAGAARRTGRSHAG 306
           TK++    + AAL  L   G D L T K  E  GV    +     E         + H  
Sbjct: 112 TKIKNPAQLDAALSFLTNTGPDSLDTGKFEEACGV---GVVVSIEEIKSTVNEVRKRHPW 168

Query: 307 GESYAFGAESRRRLALI 357
           G++ A   E  ++LA I
Sbjct: 169 GDAKATKDEIDKKLAEI 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,919,436
Number of Sequences: 37544
Number of extensions: 439710
Number of successful extensions: 1372
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)