Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_L23
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.30 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.7  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.9  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   6.5  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   6.5  
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom...    26   8.6  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    26   8.6  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 289 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 390
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 212 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 114
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 367 FPCVPTQSFVDPIHLKICQYPHGGL 293
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
 Frame = -2

Query: 275 HVSNAGSG*LRFWSXGGDSRSYVARSESIMR----DSDVAFSHSAALAIAQVRRNGNKNN 108
           H+S    G  R ++ GG   SY A+   + R    D+ V ++ SAAL +  + R  + ++
Sbjct: 433 HLSGMTMGMRRMFTQGG---SYSAQERGLCRLEQKDTVVRYAQSAALYLIFLLRRPSADS 489

Query: 107 ISRRHFMTTDLLKLSRVNPEXNSARGFLN 21
             RRH        + R     NS+    N
Sbjct: 490 GIRRHLEAMCGATVERKEGGSNSSSNISN 518


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
 Frame = -2

Query: 275 HVSNAGSG*LRFWSXGGDSRSYVARSESIMR----DSDVAFSHSAALAIAQVRRNGNKNN 108
           H+S    G  R ++ GG   SY A+   + R    D+ V ++ SAAL +  + R  + ++
Sbjct: 433 HLSGMTMGMRRMFTQGG---SYSAQERGLCRLEQKDTVVRYAQSAALYLIFLLRRPSADS 489

Query: 107 ISRRHFMTTDLLKLSRVNPEXNSARGFLN 21
             RRH        + R     NS+    N
Sbjct: 490 GIRRHLEAMCGATVERKEGGSNSSSNISN 518


>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
           Trr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 529 WSANVQALYPGDGAVIRYTGAESVVLGGGCS 437
           W A + A    DGAV  Y      V+GGG S
Sbjct: 135 WQAGISACAVCDGAVPIYRNKPLAVVGGGDS 165


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = -2

Query: 230 GGDSRSYVARSESIMRDSDVAFSHSAALAIAQVRRNGNKNNISRRHFMTTDLLKLSRVNP 51
           GG S  +   +++ + D  +     A+   + +  N +KNNI   H  T++  K S  + 
Sbjct: 31  GGSSELHTYMNDTSLADIPLFEDTLASEVSSSLISNPSKNNIQHLHPNTSEPFKTSSKSD 90

Query: 50  EXNS 39
           E +S
Sbjct: 91  EYDS 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,977,126
Number of Sequences: 5004
Number of extensions: 53347
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)