Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_L23
         (924 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    30   2.3  
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    29   5.2  
11_06_0512 - 24460391-24462337                                         28   9.1  
05_04_0272 + 19624898-19625071,19625909-19626370,19626471-196269...    28   9.1  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   9.1  
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677...    28   9.1  

>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 289 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 405
           V+ H  +  R S EL+RQ  ELER+G  L+   G L  +
Sbjct: 89  VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127


>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -3

Query: 391 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVRG 227
           H P AAA  P VP++    P  L +     GG GL   S S +  G  + D G+ G
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>11_06_0512 - 24460391-24462337
          Length = 648

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
 Frame = +2

Query: 257 TLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-------GCSTWLVSSERLWRP 415
           +L +++   +     +R L DLQ  W + R  +   E+       G + W + + ++W  
Sbjct: 561 SLEIQNGECKVEVLRLRCLKDLQFCWEELRELYPMLEFVEAQHCSGVANWPLDNNKVWTK 620

Query: 416 DVVLLNAAATTAED 457
           D    NAA+  +E+
Sbjct: 621 DAETSNAASAQSEE 634


>05_04_0272 + 19624898-19625071,19625909-19626370,19626471-19626905,
            19626992-19627237,19627318-19628085,19628245-19628417,
            19629337-19629440,19629525-19630127,19630210-19630214
          Length = 989

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 449  AEDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNRHADLHVQVRF 592
            A + + R +++NN SVS     DIS      +++  N  +D H  V F
Sbjct: 883  ASNVSFRPQITNNSSVSNGTMTDISNGCLTSINSGQNEASDSHNSVEF 930


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 473 GRGERSPRRWLQPRLAVPRQASTSVPRTP 387
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


>01_07_0188 -
           41866689-41866763,41866889-41867155,41867277-41867722,
           41867945-41868033,41868279-41868368,41868661-41868739,
           41868979-41869042,41869597-41869684,41869776-41869836,
           41869906-41869969,41870134-41870188,41870275-41870346,
           41870469-41870551,41870629-41870724,41871279-41871383,
           41872159-41872227,41872470-41872561,41872667-41872886
          Length = 704

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -3

Query: 418 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 251
           ++PP     H   + AP P +P+ S   P++  +   PH        S +QM  Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,571,487
Number of Sequences: 37544
Number of extensions: 473770
Number of successful extensions: 1504
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1502
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)