Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_L22
(846 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 168 7e-43
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 145 8e-36
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 130 2e-31
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 127 2e-30
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 120 2e-28
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 108 8e-25
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 102 7e-23
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 98 1e-21
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 76 6e-15
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 30 0.47
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 29 1.1
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 27 2.5
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 27 3.3
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 26 5.8
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 26 5.8
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 26 7.7
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 168 bits (409), Expect = 7e-43
Identities = 83/134 (61%), Positives = 105/134 (78%)
Frame = +3
Query: 273 NKYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSV 452
N + P SQ Y ++L R LPV++ + +F+++ + +Q IV VGETGSGKTTQIPQ+ V
Sbjct: 54 NFFNDKPFSQNYFKILETRRELPVYQQREEFLKIYHENQIIVFVGETGSGKTTQIPQF-V 112
Query: 453 EFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLK 632
+ + L + +ACTQPRRVAAMSVA+RVA+EMDV LG+EVGY+IRFEDCSGP TLLK
Sbjct: 113 LYDELPHLTNTQ-IACTQPRRVAAMSVAKRVADEMDVDLGEEVGYNIRFEDCSGPNTLLK 171
Query: 633 YMTDGMLLREAMSD 674
YMTDGMLLREAM+D
Sbjct: 172 YMTDGMLLREAMTD 185
Score = 58.8 bits (136), Expect = 9e-10
Identities = 26/40 (65%), Positives = 35/40 (87%)
Frame = +2
Query: 710 NEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLNAGK 829
+EAHERTLATDILMG++K + +R DLK+++MSATL+A K
Sbjct: 197 DEAHERTLATDILMGLMKRLATRRPDLKIIVMSATLDAKK 236
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 145 bits (351), Expect = 8e-36
Identities = 68/118 (57%), Positives = 92/118 (77%)
Frame = +3
Query: 327 RLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQ 506
R LPV++YK+D ++ +N +Q +++V ETGSGKTTQ+PQ+ E G K + CTQ
Sbjct: 415 RKSLPVYQYKDDLLKAINEYQVLLIVAETGSGKTTQLPQFLHEAGYTKG---NKKICCTQ 471
Query: 507 PRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDPN 680
PRRVAAMSVA RVA+EMDV LGQEVGYSIRFE+ + +T++KY+TDGMLLRE +++P+
Sbjct: 472 PRRVAAMSVAARVAKEMDVRLGQEVGYSIRFENATSEKTVIKYLTDGMLLREFLTEPD 529
Score = 51.2 bits (117), Expect = 2e-07
Identities = 23/40 (57%), Positives = 33/40 (82%)
Frame = +2
Query: 710 NEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLNAGK 829
+EAHERTL TDIL G++K++ + R DLK++I SAT++A K
Sbjct: 539 DEAHERTLHTDILFGLVKDIARFRPDLKVLISSATIDAEK 578
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 130 bits (315), Expect = 2e-31
Identities = 65/118 (55%), Positives = 86/118 (72%)
Frame = +3
Query: 324 KRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACT 503
+R GLPV++ + F+ ++ +Q +VL+GETGSGKTTQI Q+ E S +K + CT
Sbjct: 506 QREGLPVFKLRKQFLEAVSKNQILVLLGETGSGKTTQITQYLAEEGYTSD---SKMIGCT 562
Query: 504 QPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDP 677
QPRRVAAMSVA+RVAEE+ +G+EVGY+IRFED + T +KYMTDGML RE + DP
Sbjct: 563 QPRRVAAMSVAKRVAEEVGCRVGEEVGYTIRFEDKTSRMTQIKYMTDGMLQRECLVDP 620
Score = 53.2 bits (122), Expect = 4e-08
Identities = 23/38 (60%), Positives = 32/38 (84%)
Frame = +2
Query: 710 NEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLNA 823
+EAHERT+ATD+L G+LK + +R DLKL++ SATL+A
Sbjct: 631 DEAHERTVATDVLFGLLKGTVLKRPDLKLIVTSATLDA 668
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 127 bits (306), Expect = 2e-30
Identities = 66/135 (48%), Positives = 90/135 (66%)
Frame = +3
Query: 276 KYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVE 455
K T ++ Y E +R LP + + + ++ +Q +++VGETGSGKTTQ+ Q+ E
Sbjct: 475 KDTEFARTKSYRE---QREFLPAFAVREQLLSVIRDNQVLIVVGETGSGKTTQLAQFLYE 531
Query: 456 FAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKY 635
G + + CTQPRRVAAMSVA+RV+EEM V LG VGYSIRFED +GP T++KY
Sbjct: 532 ----DGYHRNGMIGCTQPRRVAAMSVAKRVSEEMGVRLGSTVGYSIRFEDVTGPDTVIKY 587
Query: 636 MTDGMLLREAMSDPN 680
MTDG+LLRE++ N
Sbjct: 588 MTDGVLLRESLMQNN 602
Score = 60.5 bits (140), Expect = 3e-10
Identities = 29/51 (56%), Positives = 41/51 (80%), Gaps = 3/51 (5%)
Frame = +2
Query: 686 NNIELYS---SNEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLNAGK 829
NN+E YS +EAHER+L TDILMG+LK+V+ +R D+KL++ SAT+N+ K
Sbjct: 601 NNLEKYSVIIMDEAHERSLNTDILMGLLKKVLSRRRDIKLLVTSATMNSQK 651
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 120 bits (290), Expect = 2e-28
Identities = 60/122 (49%), Positives = 86/122 (70%)
Frame = +3
Query: 312 ELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKG 491
++L +R LP+WE + + + ++ IV+VGETGSGK+TQIPQ+ E +
Sbjct: 88 DILEQRKNLPIWEAHDTLCQQIQDNRVIVVVGETGSGKSTQIPQFLNECP----YAQEGC 143
Query: 492 VACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMS 671
VA TQPRRVAA+++A+RVA E LG++VGYSIRF+D + +T +KY+TDGMLLRE ++
Sbjct: 144 VAITQPRRVAAVNLAKRVAAEQGCRLGEQVGYSIRFDDTTSKKTRIKYLTDGMLLRELIN 203
Query: 672 DP 677
DP
Sbjct: 204 DP 205
Score = 55.2 bits (127), Expect = 1e-08
Identities = 24/38 (63%), Positives = 34/38 (89%)
Frame = +2
Query: 710 NEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLNA 823
+EAHERTL TD+L+G +K++IK+R L+++IMSATLNA
Sbjct: 216 DEAHERTLMTDMLLGFVKKIIKKRPALRVIIMSATLNA 253
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 108 bits (260), Expect = 8e-25
Identities = 54/129 (41%), Positives = 80/129 (62%)
Frame = +3
Query: 273 NKYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSV 452
N ++ S Y +R+R LP WE + M + Q +V+ GETGSGK+TQ+ Q+ +
Sbjct: 556 NNWSERVKSPSYQLKVREREKLPAWESRRKIMDAIQHSQVVVISGETGSGKSTQVVQFIL 615
Query: 453 EFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLK 632
+ SG + V CTQPRR++A+S+A+RVA E D +G+EVGYS+ E +TLL+
Sbjct: 616 DHYLSSGEKDLQTVVCTQPRRISAISLAERVAFERDTTVGKEVGYSVHGEKSISKETLLE 675
Query: 633 YMTDGMLLR 659
+ T G+LLR
Sbjct: 676 FCTTGLLLR 684
Score = 41.9 bits (94), Expect = 1e-04
Identities = 18/38 (47%), Positives = 30/38 (78%)
Frame = +2
Query: 710 NEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLNA 823
+E HER++ DIL+ +LK VI + +LK+++MSAT+N+
Sbjct: 703 DEVHERSIENDILLTLLKLVISRIPNLKVILMSATVNS 740
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 102 bits (244), Expect = 7e-23
Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Frame = +3
Query: 312 ELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKG 491
E+ RL LP+ + M + + +++ G TGSGKTTQ+PQ+ E S + G
Sbjct: 390 EIQESRLALPIVAEEQRIMEQIFANDVVIICGATGSGKTTQLPQFLFEAGFSSPESENPG 449
Query: 492 -VACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAM 668
+A TQPRRVAA+S+A+RV+EE+ +V Y IRF+ P T +K+MTDG+LLRE
Sbjct: 450 MIAITQPRRVAAVSIAKRVSEEL-TGFSSKVSYQIRFDSTINPDTAIKFMTDGILLRELS 508
Query: 669 SD 674
SD
Sbjct: 509 SD 510
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 10/46 (21%)
Frame = +2
Query: 710 NEAHERTLATDILMGVLKEVIKQRSD----------LKLVIMSATL 817
+EAHER++ TDIL+G+L +++ R + LKL+IMSATL
Sbjct: 522 DEAHERSVNTDILLGLLSRIVRLRREMSKSDQKVKPLKLIIMSATL 567
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 98.3 bits (234), Expect = 1e-21
Identities = 51/120 (42%), Positives = 76/120 (63%)
Frame = +3
Query: 318 LRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVA 497
++K+L LP+ +Y+N + + +Q +++G TG GKTTQIPQ+ E S G +
Sbjct: 20 IQKKL-LPITKYRNQLLYAVEQNQITIVLGHTGCGKTTQIPQFLYEAGWASQNGI---IG 75
Query: 498 CTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDP 677
CTQPRR+ A SV++RV+ E++ G GYSI+F+ +T +KYMTDG+LL E DP
Sbjct: 76 CTQPRRLVAKSVSERVSLELNSPPGSLCGYSIQFDHNVSEKTKIKYMTDGILLNEIFFDP 135
Score = 53.2 bits (122), Expect = 4e-08
Identities = 21/40 (52%), Positives = 35/40 (87%)
Frame = +2
Query: 710 NEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLNAGK 829
+E HERTL+TD+L+GVLK ++++R+D +LV+ SA+++A K
Sbjct: 146 DEVHERTLSTDLLLGVLKRILEKRNDFRLVLSSASVDANK 185
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 76.2 bits (179), Expect = 6e-15
Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 5/140 (3%)
Frame = +3
Query: 255 PIHLXLNKYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQ 434
P LNK+ S+ + R LP ++ + +N Q +++ G+TG GK+TQ
Sbjct: 604 PPETLLNKWRQQLESESAEKFKVFRNQLPATMFRETIIDAVNNSQLLIISGDTGCGKSTQ 663
Query: 435 IPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEM----DVALGQE-VGYSIRF 599
IP + +E + + GKA + T+PRR++A+S+A RV++E+ A E VGYS+R
Sbjct: 664 IPAFLLENSTKN--GKAVKIYVTEPRRISAISLANRVSQELGGNPPSARSHELVGYSVRL 721
Query: 600 EDCSGPQTLLKYMTDGMLLR 659
+ P T L Y+T G LR
Sbjct: 722 DSKCTPLTPLTYVTTGTFLR 741
Score = 42.7 bits (96), Expect = 6e-05
Identities = 19/40 (47%), Positives = 30/40 (75%)
Frame = +2
Query: 710 NEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLNAGK 829
+E HER++ +D+L+ + ++KQ LK++IMSATLNA K
Sbjct: 758 DEVHERSIDSDLLLIHVLHLLKQHPHLKIIIMSATLNAEK 797
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.9 bits (64), Expect = 0.47
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +3
Query: 375 LNTHQCIVLVGETGSGKTTQI 437
+ T++ ++LVGETG+GKTT I
Sbjct: 464 VQTNEPLLLVGETGTGKTTTI 484
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 369 RLLNTHQCIVLVGETGSGKTT 431
R L + ++LVG+TG GKTT
Sbjct: 1181 RCLLAKEPVLLVGDTGCGKTT 1201
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +3
Query: 366 MRLLNTHQCIVLVGETGSGKT 428
M+ + +QCI++ GE+G+GKT
Sbjct: 120 MKSYHENQCIIISGESGAGKT 140
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 27.5 bits (58), Expect = 2.5
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +3
Query: 306 YHELLRKRLGLPVWEYKNDFMRLLNT---HQCIVLVGETGSGKTTQIPQWSVEFAAVSGL 476
Y E R L ++ D + +N +Q I++ GE+G+GKT FA+V L
Sbjct: 131 YSEKSRDELDPHLYAIAEDSYKCMNQEHKNQTIIISGESGAGKTVSARYIMRYFASVQAL 190
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 27.1 bits (57), Expect = 3.3
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +3
Query: 228 LPIRLPPWLPIHLXLNKYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVG 407
LP P +P H + + H +R R LP+ ND + + I +VG
Sbjct: 1201 LPSEAPSIIPDHRPPEGWPSHGAIKFDHYSVRYRENLPL--VLNDISVNIKPQEKIGIVG 1258
Query: 408 ETGSGKTT 431
TG+GK+T
Sbjct: 1259 RTGAGKST 1266
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 26.2 bits (55), Expect = 5.8
Identities = 18/85 (21%), Positives = 38/85 (44%)
Frame = +3
Query: 393 IVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALG 572
++LVG G+GK TQ P ++ ++ L + R+ A+++ ++ +
Sbjct: 6 LILVGPPGAGKGTQAPNIQKKY-GIAHLATGDMLRSQVARQTELGKEAKKIMDQGGLVSD 64
Query: 573 QEVGYSIRFEDCSGPQTLLKYMTDG 647
V I+ E + P+ ++ DG
Sbjct: 65 DIVTGMIKDEILNNPECKNGFILDG 89
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 26.2 bits (55), Expect = 5.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 787 FETRYYVSHVKCWKV 831
F+ RYY + CWKV
Sbjct: 122 FQRRYYAEIISCWKV 136
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 291 PHSQRYHELLRKRLGLPVWEYKNDF 365
PHS RYH L LG +NDF
Sbjct: 36 PHSSRYHWQLHSNLGESAVFDENDF 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,407,606
Number of Sequences: 5004
Number of extensions: 69418
Number of successful extensions: 226
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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