Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_L22
         (846 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   2.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.7  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   8.2  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 289 RPVYLFSXRCIGSHGGSRI 233
           RP Y    R +GSH G R+
Sbjct: 370 RPQYQIDKRSMGSHHGQRV 388


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 383 SPMYSARRRNRVREDYPDPPVVCRVCCSKWPRQG*RRGLYSTKTSGC 523
           +P  S     RV  ++    V+CRVC  K    G   G++S +  GC
Sbjct: 45  APQDSENLLGRVLAEFDGTTVLCRVCGDK--ASGFHYGVHSCE--GC 87


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 223 SNYQYDYHHGYQY 261
           +NY+Y+Y++ Y Y
Sbjct: 94  NNYKYNYNNKYNY 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,166
Number of Sequences: 438
Number of extensions: 4969
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)