Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_L17
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.6  
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    26   6.1  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   6.1  
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    26   6.1  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    26   6.1  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    26   8.1  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   8.1  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +1

Query: 55  ILYLVTCFSSLDAIASASRMRKRNITVPHDLTRSSQRTSGTPPPTPGIVVNLTLHLRHAN 234
           +LY  T  +S ++ +S+S     N T P   T +S+ TS T  P        T      +
Sbjct: 597 VLYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTS 656

Query: 235 I-RESESTVTNTGRSANE 285
           I   S ST T++   A+E
Sbjct: 657 ISTSSSSTATSSTSFASE 674


>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 61  YLVTCFSSLDAIASASRMRKRNITV---PHDLTRSSQRTSGTPPPT 189
           +L T   SL  +   +R+ + N++V   P D +  SQ   GTP PT
Sbjct: 137 FLDTVILSLFVLCGLTRLARFNVSVNSIPKDGSGKSQFFEGTPIPT 182


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 98  LVRAECENATSLSLMI*LAPRNVRAGLPPRLQ 193
           ++R + ENA  L L+I  APR + + + P LQ
Sbjct: 618 IIRTKEENAKLLCLLIAAAPRLIESHVEPILQ 649


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 492 RNWSANVQALYPGDGAVIRYTGAESVVPRRWLQ 394
           RNW   +Q L P D   +RY   +S + + WLQ
Sbjct: 158 RNW---IQHLAPFDYLPVRYANVQSNLIKYWLQ 187


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 109 RMRKRNITVPHDLTRSSQRTSGTPPPTPGIVV 204
           +++ R +  P + +RSS   +G PPP P I +
Sbjct: 3   KLKIRAVQPPPNDSRSSTPATGPPPPIPKIKI 34


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 79  SSLDAIASASRMRKRNITVPHDLTRSSQRT 168
           S LDAI S S+ +K     PHD   +S +T
Sbjct: 316 SCLDAIDSRSQSKKLGKETPHDYLITSTKT 345


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 208 LTLHLRHANIRESESTVTNTGRSANELDRQTTELERR 318
           L L L+ +NI E +  +T      N+L+ QTTEL+ R
Sbjct: 879 LVLQLQ-SNITELKQDITLQRTVRNQLEIQTTELKER 914


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,974
Number of Sequences: 5004
Number of extensions: 49267
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)