Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_L17
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0059 + 14149796-14150350,14152303-14152433,14153479-141535... 31 1.6
07_03_1107 - 24024387-24024497,24025799-24026410 30 2.8
07_03_1452 - 26629219-26629428,26630113-26630280,26630363-266304... 29 6.4
05_01_0479 - 3920992-3921513,3921643-3921756,3921905-3922482,392... 29 6.4
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 28 8.5
04_03_0535 - 16850704-16853001,16854055-16854115,16854228-168543... 28 8.5
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277... 28 8.5
>03_03_0059 +
14149796-14150350,14152303-14152433,14153479-14153520,
14153632-14153740,14154262-14154340,14154437-14154733,
14154820-14154932,14155375-14155482,14155554-14155616,
14155698-14155865,14156283-14156348
Length = 576
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +1
Query: 178 PPPTPGIVVNLTLHLRHANIRESESTVTNTGRSANELDR 294
PPP+P + L RH +++ +E+++ +G LD+
Sbjct: 97 PPPSPAKHIRALLARRHGSVKPNEASIPESGEPGVALDK 135
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 432 TGAESVVPRRWLQPRLAVPRQASTSVPRTPAKCCSPTAPA 313
T A + P P + P A+ + P TPA +PT PA
Sbjct: 43 TPAPAAAPTTTTPPAASTPPAAAPTTPATPAPAEAPTTPA 82
>07_03_1452 -
26629219-26629428,26630113-26630280,26630363-26630425,
26630499-26630606,26630820-26630932,26631026-26631322,
26631424-26631502,26631733-26631841,26631927-26631968,
26632467-26632597,26633482-26633623,26633713-26633828,
26634121-26634657
Length = 704
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 178 PPPTPGIVVNLTLHLRHANIRESESTVTNTGRSANELDR 294
PPP+P + L RH +++ +E+ + G + LD+
Sbjct: 91 PPPSPAKHIRALLARRHGSVKPNEAPIPEGGETEVGLDK 129
>05_01_0479 -
3920992-3921513,3921643-3921756,3921905-3922482,
3922709-3923067,3923132-3923205
Length = 548
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 252 GLGLTNVSMSQMQGQVDYDSWSR 184
GLGL +V + M GQV+ + WS+
Sbjct: 135 GLGLYHVELGNMSGQVEINIWSQ 157
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 28.3 bits (60), Expect = 8.5
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
Frame = -3
Query: 495 HRNWS-ANVQALYPGDGAVIRYTGAESVVPRRWLQPRLAVPRQASTSVPRTPAKCCSPTA 319
HR S +Q + GD + Y S +W+ P LA + S P ++ P A
Sbjct: 622 HRRSSYKELQYISDGDNNGVIYYAGTSFGKHQWINPVLAKNITVTASSPN--SRYTDPKA 679
Query: 318 PAFQLSRLSIQFICRSACIRHGGLGLTNVSMSQMQGQVDYDSWS 187
L + Q +C +R G T + +QG +D SW+
Sbjct: 680 ----LVSKNYQLMCNYYTVRQDG-SATFMRSWVLQGSMDGRSWT 718
>04_03_0535 - 16850704-16853001,16854055-16854115,16854228-16854323,
16854394-16854521,16855016-16855067,16855182-16855274,
16855473-16855590,16856456-16856609,16857512-16857643,
16859136-16859216,16859353-16859507,16860118-16860343,
16860423-16860507,16860593-16860689,16861785-16861949,
16862046-16862121,16863041-16863103,16863193-16863359,
16863495-16863669,16863743-16863835,16864694-16864810,
16865589-16865778,16866092-16866126
Length = 1618
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +1
Query: 217 HLRHANIRESESTVTNTGRSANELDRQTTELERRGSGAAALGWCPRNACGGLTW 378
H R +R++ T RSA LD T A+ALG C R C + W
Sbjct: 956 HARRGRVRDALGTAARMHRSAAGLDEATY--------ASALGACARGRCLRMGW 1001
>02_05_0822 +
32025992-32026696,32027237-32027314,32027547-32027713,
32027811-32027885,32028624-32028742,32028908-32029204,
32029275-32029362,32029467-32029572,32029727-32029837,
32030520-32030683,32031237-32031357,32031958-32032182,
32032267-32032457,32032658-32032825,32032911-32033016,
32033301-32033438,32033533-32033697,32033777-32033980,
32034341-32034535,32034603-32034674,32034797-32034949
Length = 1215
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 368 PPQAFR-GHQPSAAAPLPLRSNSVVCRSNS 282
PP+ FR GH P AAAP PLR++ S S
Sbjct: 32 PPEKFRSGHLPRAAAP-PLRTDDGSVASGS 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,446,578
Number of Sequences: 37544
Number of extensions: 440452
Number of successful extensions: 1398
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -