Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_L15
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   148   8e-37
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    30   0.47 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.4  
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    27   2.5  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    27   4.4  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    26   7.7  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  148 bits (359), Expect = 8e-37
 Identities = 68/106 (64%), Positives = 84/106 (79%)
 Frame = +3

Query: 378 EVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIIN 557
           EVR+ ++ N + APARP AIAPL V +PA NTG+ P KTSFFQAL IPTKI++GTIEI +
Sbjct: 95  EVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITS 154

Query: 558 DVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPE 695
           DVH++    KVG SEATLLNMLNISPF+YG+ V  +YD G +F+PE
Sbjct: 155 DVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPE 200



 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 43/86 (50%), Positives = 63/86 (73%)
 Frame = +2

Query: 116 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 295
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG++ ++MGKNTM+R+A++  +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 296 DNNPALEKLLPHIKGNVGFVFTRGDL 373
           ++ P LE+LLP ++GNVGFVFT  DL
Sbjct: 68  NDMPELERLLPVVRGNVGFVFTNADL 93


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 246 CSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLAS 353
           CS EKT  C++  K+  T+ +PS  CC   ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 553 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 428
           +IS  P + L+GI  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 312 RAGLLSRWSLMALRIIVFFPMSTILEPR 229
           +A     W LM + +++F  +  ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 560 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 438
           IVD  NS   +  R  + L ++G+L+  +GV GG +  ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 697 FSGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTL 584
           FS   ++ E Y       +EN  +FN  R  +S+ P++
Sbjct: 136 FSSRAVLEEEYYSQNPEAFENNIVFNWARDNSSDPPSI 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,462,225
Number of Sequences: 5004
Number of extensions: 71607
Number of successful extensions: 195
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)