Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_L14
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 31 0.25
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.8
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.3
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 27 2.3
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 4.0
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 5.4
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 26 5.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 7.1
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 25 9.4
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 25 9.4
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 25 9.4
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 30.7 bits (66), Expect = 0.25
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +3
Query: 132 DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 311
DI FD + H+ LI L + R + +IR L N + T +R ++ G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQ 423
Query: 312 GSALSP 329
GS +SP
Sbjct: 424 GSIVSP 429
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 1.8
Identities = 30/119 (25%), Positives = 47/119 (39%)
Frame = +2
Query: 269 NAFPAPSRHSRSPARLRPLPXYYSVCISTIYPGLRRPICRSSPMTPPSTTRVGRRRCFID 448
+A P PS SPA P+P S++ P + SP + PS +
Sbjct: 142 SAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSA------VP 195
Query: 449 DFRPQLPPWDSGSGSGASTLTPRKAQRCSSKGVALRNTTLSIPLPTRRVNNPAPAVRPI 625
P++PP A+T + R + G A T+ S P R + P+ +V P+
Sbjct: 196 PMPPKVPPPPLSQAPVANT-SSRPSSFAPPAGHAPNVTSESPKFPNRGPSIPSASVPPV 253
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 654 PRRSNI*ASPSTVG*HSAPTSRRYAIVPPSS*DVSTR 764
P SN + ST H P+S+R +++PP++ ++ +R
Sbjct: 314 PSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSR 350
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 27.5 bits (58), Expect = 2.3
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +2
Query: 272 AFPAPSRHSRSPARLRPLPXYYSVCISTIYPGLRRPICRSSPMTP-PSTTRVGRRRCFID 448
+ P PS S + L + S+ + R+P RS P+TP TR ++
Sbjct: 75 SLPTPSSDKSSTSPFPYLKGSFDDRFSSTHSLTRQPSPRS-PLTPLKGNTRASPEIRYVS 133
Query: 449 DFRPQLPPWDSGSGS 493
DF P P++ S
Sbjct: 134 DFTPPSSPFEDMQAS 148
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 286 VTSQPESRKAPPSPRLLFSLYINDIPRSPETHLPLFA 396
+ +QP+ K PSP F L+ + RS ET+L +A
Sbjct: 47 IDTQPKEEKPEPSPSSPFGLFAYVVKRS-ETYLIQYA 82
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 715 DVGAECHPTVEGDA*IFDLRGPRYGLVVHRDWANG 611
DV A C +++ +DLR PR+ + DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 242 VRQVVSYDEHEPVWHSHV 189
+R+ V YDE EP+W S +
Sbjct: 436 IRECVRYDEDEPLWISEL 453
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 7.1
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +3
Query: 549 PSETPR*ASLSRLGASITPPPPFAQSRCTTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYA 728
PS R AS R A + PPP S +SP P + + ++P + ++P + A
Sbjct: 951 PSNDGRKASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAA-PLA 1009
Query: 729 IVPP 740
VPP
Sbjct: 1010 RVPP 1013
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 9.4
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 425 GRRRCFIDDFRPQLPPWDSGSGSGASTLTPRKAQR-CSSKGVALRNTTLSIPLP 583
G+R FI DS G+G +T+ P A R C G T+SI +P
Sbjct: 264 GQRLHFIPPSFHMQTTCDSCGGTG-TTIPPNSACRSCMGSGTVRERKTVSIDIP 316
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +2
Query: 593 VNNPAPAVRPITMYDQPIP---WAPKVKYLGVTLDSRMTFRPHIKTVRDR 733
V+ AP++R ++ P W PK K G R R H + V D+
Sbjct: 427 VDRAAPSLRKAEAEEEKPPEEKWVPKAKARGKNSALRRYLRKHARNVVDQ 476
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.4 bits (53), Expect = 9.4
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = +2
Query: 479 SGSGSGASTLTPRKAQRCSSKGVALRNTTLSIPLPTRRVNNPAPAVRPITMYDQ 640
SG G G T K + A R SI L ++V A +RP TMY Q
Sbjct: 277 SGEGVGPQEYTGIKMEVLEFPEAA-RKALQSIDLSNKKVCMIAATLRPETMYGQ 329
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,587,735
Number of Sequences: 5004
Number of extensions: 82447
Number of successful extensions: 267
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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