Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_L14
(788 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 63 2e-10
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 56 2e-08
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 49 4e-06
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 49 4e-06
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 48 6e-06
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 44 2e-04
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 33 0.23
Z47067-3|CAA87330.2| 446|Caenorhabditis elegans Hypothetical pr... 32 0.41
U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical pr... 32 0.41
Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical pr... 31 1.2
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 30 2.2
Z74026-2|CAD54122.1| 588|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z81533-14|CAB04331.2| 707|Caenorhabditis elegans Hypothetical p... 28 6.6
U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical pr... 28 6.6
U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z81110-9|CAB03261.2| 353|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z81094-8|CAB03155.2| 353|Caenorhabditis elegans Hypothetical pr... 28 8.8
U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n... 28 8.8
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n... 28 8.8
U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical pr... 28 8.8
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 63.3 bits (147), Expect = 2e-10
Identities = 29/69 (42%), Positives = 46/69 (66%)
Frame = +3
Query: 123 LFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAG 302
++ D +KAFD++ H+ L+ KL ++ L++ + ++LSNRSFR R+ T S + T G
Sbjct: 17 IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCG 76
Query: 303 VPQGSALSP 329
VPQG+ LSP
Sbjct: 77 VPQGAVLSP 85
Score = 37.9 bits (84), Expect = 0.008
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +1
Query: 331 LLFSLYINDIPR-SPE-THLPLFADDTAIYYSCRKKALLHRRLQTAATTMGQWFRKWRID 504
LLF +Y+NDI PE FADDT +Y S K LQ+A + W + ++
Sbjct: 86 LLFGIYVNDISSILPEKVACKQFADDTKLYAS-TPKTESENNLQSALDAVVDWTKGSKLT 144
Query: 505 INPTKSTAV-LFKRGRPPKHHAE 570
+N +K+ V + KR K+H +
Sbjct: 145 LNQSKTVHVTVGKRRIDFKYHLD 167
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 56.4 bits (130), Expect = 2e-08
Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Frame = +3
Query: 18 QFGFRARHSCVHQVHRLTEHILLGLNRRKPIPTGALF--FDIAKAFDKVWHNGLIYKLYN 191
Q GF+ HS V ++T I+ GLN + P P A+ D+ AFDKV L L
Sbjct: 436 QHGFKPEHSTTTAVIQVTNDIIGGLNMKNP-PERAIMACLDLRAAFDKVPTKKLCNDLME 494
Query: 192 -MGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPXTIQFVYQRYTPV 368
G+ ++ L + +YL R R + S+ + GVPQGS +SP F Y + P
Sbjct: 495 AQGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTF-YLKDMPT 553
Query: 369 SGD 377
D
Sbjct: 554 QQD 556
Score = 37.1 bits (82), Expect = 0.014
Identities = 21/77 (27%), Positives = 38/77 (49%)
Frame = +1
Query: 334 LFSLYINDIPRSPETHLPLFADDTAIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINP 513
LF+ Y+ D+P +T L +ADD +I +K ++Q + ++ ++ + I+
Sbjct: 543 LFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISA 602
Query: 514 TKSTAVLFKRGRPPKHH 564
KST +F PK H
Sbjct: 603 EKSTVTVF--SCDPKEH 617
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 48.8 bits (111), Expect = 4e-06
Identities = 33/105 (31%), Positives = 46/105 (43%)
Frame = +3
Query: 15 EQFGFRARHSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNM 194
EQ GFR S + +H L LL + R IP +F D KAFD V H + L
Sbjct: 655 EQAGFRRSFSTIDHIHSLQR--LLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQ 712
Query: 195 GVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSP 329
G + ++++ N + + R VT GV QG +SP
Sbjct: 713 GADGAYIDLLKECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISP 756
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 48.8 bits (111), Expect = 4e-06
Identities = 33/105 (31%), Positives = 46/105 (43%)
Frame = +3
Query: 15 EQFGFRARHSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNM 194
EQ GFR S + +H L LL + R IP +F D KAFD V H + L
Sbjct: 394 EQAGFRRSFSTIDHIHSLQR--LLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQ 451
Query: 195 GVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSP 329
G + ++++ N + + R VT GV QG +SP
Sbjct: 452 GADGAYIDLLKECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISP 495
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 48.4 bits (110), Expect = 6e-06
Identities = 33/105 (31%), Positives = 46/105 (43%)
Frame = +3
Query: 15 EQFGFRARHSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNM 194
EQ GFR S + +H L LL + R IP +F D KAFD V H + L
Sbjct: 484 EQAGFRRSFSTIDHIHSLQR--LLEVGREYQIPLTLVFIDFKKAFDTVEHQAIWKSLDEQ 541
Query: 195 GVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSP 329
G + ++++ N + + R VT GV QG +SP
Sbjct: 542 GADGAYIDLLKECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISP 585
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +3
Query: 141 KAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRH-VTAGVPQGS 317
KAFD+V H+ L+ KL++ G+ D+LS+R+F +V H +++GVP+GS
Sbjct: 2 KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGS 61
Query: 318 ALSP 329
P
Sbjct: 62 VSGP 65
Score = 31.1 bits (67), Expect = 0.94
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +2
Query: 620 PITMYD-QPIPWAPK--VKYLGVTLDSRMTFRPHIKTV 724
P T+Y +P +P + LG+ DS++TF+PHIK +
Sbjct: 178 PKTVYKINNLPISPSNIARDLGILTDSKLTFKPHIKKI 215
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 33.1 bits (72), Expect = 0.23
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +3
Query: 123 LFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAG 302
+F D KAFD V H + L G + + ++++ N + + R VT G
Sbjct: 40 VFIDFKKAFDSVEHQAIWKSLDEQGADEAYIDLLKECYKNCTTNF-TPFLRPITVPVTKG 98
Query: 303 VPQGSALSP 329
V QG +SP
Sbjct: 99 VRQGDPISP 107
>Z47067-3|CAA87330.2| 446|Caenorhabditis elegans Hypothetical
protein C43C3.3 protein.
Length = 446
Score = 32.3 bits (70), Expect = 0.41
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +1
Query: 229 TTCRTVRSDIESRERVPGPVTSQ-----PESRKAPPSPRLLFSLYINDIPRSPETHLPLF 393
T TV S IES E V P++ P ++ P P+ +I I L LF
Sbjct: 332 TNSLTVVSRIESAELVASPISQPTIVDTPSEQRRDPCPKSSNMGFIPLIIMGSLASLLLF 391
Query: 394 ADDTAIYYSCRKKAL 438
+ AIY+ C+ K++
Sbjct: 392 SAGAAIYFGCKLKSM 406
>U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical protein
M02E1.1a protein.
Length = 1077
Score = 32.3 bits (70), Expect = 0.41
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 542 GVALRNTT-LSIPLPTRRVNNPAPAVRPITMYDQPIPWAPKVKYLGVTLDSRMTFRPHIK 718
GV+ NT ++ PLP+ P VRP T +D IP+ ++G + T +
Sbjct: 881 GVSDGNTLRMATPLPSFN-GRPPSVVRPRTAFDMNIPYGTDSNFIGAKQFKKNTLSVEMT 939
Query: 719 TVRDRA 736
R RA
Sbjct: 940 NARQRA 945
>Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical
protein T06D8.2 protein.
Length = 708
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Frame = +2
Query: 464 LPPWDSGSGSGASTLTPRKAQRCSSKGVALRNTTLSIPL-PT------RRVNNPAPAVR 619
LPP S S T+TP++ Q S +TT +P+ PT R P+P VR
Sbjct: 318 LPPRPPSSSSSRRTVTPKRPQTNDSVSTRRSSTTWEVPIRPTTMNSQISRKRTPSPVVR 376
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 180 KLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRH-VTAGVPQGSALSP 329
KL G+ +++L NR+F ++ S+ + +++GVPQGS P
Sbjct: 839 KLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGP 889
>Z74026-2|CAD54122.1| 588|Caenorhabditis elegans Hypothetical
protein B0240.4 protein.
Length = 588
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 581 PTRRVNNPAPAVRPITMYDQPIPW 652
P R V++P +PIT++DQ + W
Sbjct: 46 PNRTVSSPRVQQKPITIFDQIVDW 69
>Z81533-14|CAB04331.2| 707|Caenorhabditis elegans Hypothetical
protein F36G9.12 protein.
Length = 707
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -3
Query: 747 RMKAARSRTVLMWGRNVI-LLSRVTPKYLTFGAHGMGWSYIVIGRTAGAGL 598
RMK+++ ++ L W + R+TP Y+ F + +S V G TA AGL
Sbjct: 340 RMKSSQIKSPLTWILFYVHRYLRLTPPYMIFLGFYIVYSEYVQGPTAAAGL 390
>U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical
protein T13C2.3a protein.
Length = 431
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 205 TGSCSSYETTCRTVRSDIESRERVPGPVTSQPESRKAPPSPRLLF 339
T + +S TT T ++ + P T+ PE K PP P ++
Sbjct: 320 TSTTTSTTTTTTTTTTEEPTTTTTSAPTTTTPEPSKYPPLPPQIY 364
>U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical
protein T13C2.3b protein.
Length = 506
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 205 TGSCSSYETTCRTVRSDIESRERVPGPVTSQPESRKAPPSPRLLF 339
T + +S TT T ++ + P T+ PE K PP P ++
Sbjct: 395 TSTTTSTTTTTTTTTTEEPTTTTTSAPTTTTPEPSKYPPLPPQIY 439
>Z81110-9|CAB03261.2| 353|Caenorhabditis elegans Hypothetical
protein T01D3.1 protein.
Length = 353
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +2
Query: 290 RHSRSPARLRPLPXYYSV---CISTIYPGLRRPICRSSPMTPPSTTRVGRRRCFIDDFRP 460
RH +S + LR + Y + + I G R +P TPP TTR R R ++D
Sbjct: 146 RHGKSGSILRAVDPYSQLEAEMEAEIEAGARALARALTPSTPPVTTRSRRVRRDVEDITK 205
Query: 461 Q 463
Q
Sbjct: 206 Q 206
>Z81094-8|CAB03155.2| 353|Caenorhabditis elegans Hypothetical
protein T01D3.1 protein.
Length = 353
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +2
Query: 290 RHSRSPARLRPLPXYYSV---CISTIYPGLRRPICRSSPMTPPSTTRVGRRRCFIDDFRP 460
RH +S + LR + Y + + I G R +P TPP TTR R R ++D
Sbjct: 146 RHGKSGSILRAVDPYSQLEAEMEAEIEAGARALARALTPSTPPVTTRSRRVRRDVEDITK 205
Query: 461 Q 463
Q
Sbjct: 206 Q 206
>U97593-6|AAB52879.2| 925|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform c protein.
Length = 925
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 38 TLVRPSSAPPHGAHLTRAEQAETHSDRSPLLRYS 139
T RP+S+P H AE A H+++S + ++
Sbjct: 107 TAYRPASSPAPANHPVHAENAREHAEKSKVFTHN 140
>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform a protein.
Length = 1175
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 38 TLVRPSSAPPHGAHLTRAEQAETHSDRSPLLRYS 139
T RP+S+P H AE A H+++S + ++
Sbjct: 226 TAYRPASSPAPANHPVHAENAREHAEKSKVFTHN 259
>U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical
protein C34E10.8 protein.
Length = 1024
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +2
Query: 554 RNTTLSIPLPTRRVNNPAPAVRPITMYDQP----IPWAPK 661
++ TL+ PLP R PA +RP M P +P+ PK
Sbjct: 368 QSNTLTAPLPRRYQGPPAQVLRPPQMGPPPGINQVPYQPK 407
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,673,692
Number of Sequences: 27780
Number of extensions: 514187
Number of successful extensions: 1877
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1874
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -