Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_L13
         (839 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   148   6e-36
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   146   1e-35
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    31   1.1  
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847...    31   1.1  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  148 bits (358), Expect = 6e-36
 Identities = 64/83 (77%), Positives = 74/83 (89%)
 Frame = +1

Query: 34  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 213
           MSHRKF  PRHGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE 
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREV 60

Query: 214 DRPGSKINKKEIVEAVTIIETPP 282
           ++PGSK++KKE  EAVTIIETPP
Sbjct: 61  EKPGSKLHKKETCEAVTIIETPP 83



 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 24/38 (63%), Positives = 33/38 (86%)
 Frame = +2

Query: 284 MVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 397
           +V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKN
Sbjct: 84  LVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKN 121



 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 581 WQDELGRXSIEKDFXKMIRYCXVVGVIAHTXMKLLNSDKXR 703
           +  + G+  I+    KM +Y  +V VIAHT ++ +   K +
Sbjct: 137 YDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQK 177


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  146 bits (355), Expect = 1e-35
 Identities = 63/83 (75%), Positives = 74/83 (89%)
 Frame = +1

Query: 34  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 213
           MSHRKF  PRHGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE 
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREV 60

Query: 214 DRPGSKINKKEIVEAVTIIETPP 282
           ++PGSK++KKE  EAVTIIETPP
Sbjct: 61  EKPGSKLHKKETCEAVTIIETPP 83



 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 24/38 (63%), Positives = 33/38 (86%)
 Frame = +2

Query: 284 MVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 397
           +V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKN
Sbjct: 84  IVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKN 121


>07_03_0481 -
           18572206-18574314,18574591-18575185,18575304-18575371,
           18577344-18577458,18578179-18578333,18578673-18580621,
           18580691-18581372,18581550-18581621,18582558-18583199,
           18583301-18583402,18585011-18585100
          Length = 2192

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 13  SLRLSSSMSHRKFSAPRHGSM-GFYPKKRSRRHRGKVKAFPKDDPSKPVHLT 165
           S+  S+S+ H +   P+  S+ G  P   +++ + KVK   K  P   VH+T
Sbjct: 233 SMEPSTSLEHSESPPPKRKSLDGRTPASSTKKGKKKVKFVDKKHPENAVHIT 284


>01_06_0083 +
           26283492-26283756,26284255-26284467,26284620-26284771,
           26284884-26285157,26285277-26285485
          Length = 370

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 607 NRKRFXEDDPLLXCCRSHCPHSNEAVKQR 693
           N +RF  +DPLL CC  H P+   A   R
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGATCDR 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,933,517
Number of Sequences: 37544
Number of extensions: 417705
Number of successful extensions: 797
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)