Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_L13
(839 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 158 5e-39
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 158 5e-39
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 158 5e-39
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 158 5e-39
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 158 5e-39
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 158 5e-39
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 64 2e-10
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 64 2e-10
Z49907-10|CAC42250.1| 875|Caenorhabditis elegans Hypothetical p... 28 9.5
Z49907-9|CAA90092.1| 880|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z48367-7|CAC42266.1| 875|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z48367-6|CAA88325.1| 880|Caenorhabditis elegans Hypothetical pr... 28 9.5
AF319613-1|AAG49523.1| 880|Caenorhabditis elegans CLC-type chlo... 28 9.5
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 158 bits (383), Expect = 5e-39
Identities = 67/83 (80%), Positives = 78/83 (93%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 213
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 214 DRPGSKINKKEIVEAVTIIETPP 282
D+PGSK+NKKE+VEAVTI+ETPP
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPP 83
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/59 (47%), Positives = 34/59 (57%)
Frame = +2
Query: 221 PVQKSTRKXXXXXXXXXXXXXMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 397
P K +K MV GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 63 PGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = +2
Query: 581 WQDELGRXSIEKDFXKMIRYCXVVGVIAHTXMKLL 685
WQDE G+ IE DF K+ +YC + VIAHT MK+L
Sbjct: 137 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKIL 171
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 158 bits (383), Expect = 5e-39
Identities = 67/83 (80%), Positives = 78/83 (93%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 213
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 214 DRPGSKINKKEIVEAVTIIETPP 282
D+PGSK+NKKE+VEAVTI+ETPP
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPP 83
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/59 (47%), Positives = 34/59 (57%)
Frame = +2
Query: 221 PVQKSTRKXXXXXXXXXXXXXMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 397
P K +K MV GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 63 PGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = +2
Query: 581 WQDELGRXSIEKDFXKMIRYCXVVGVIAHTXMKLL 685
WQDE G+ IE DF K+ +YC + VIAHT MK+L
Sbjct: 137 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKIL 171
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 158 bits (383), Expect = 5e-39
Identities = 67/83 (80%), Positives = 78/83 (93%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 213
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 214 DRPGSKINKKEIVEAVTIIETPP 282
D+PGSK+NKKE+VEAVTI+ETPP
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPP 83
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/59 (47%), Positives = 34/59 (57%)
Frame = +2
Query: 221 PVQKSTRKXXXXXXXXXXXXXMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 397
P K +K MV GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 63 PGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +2
Query: 581 WQDELGRXSIEKDFXKMIRYCXVVGVIAHTXM 676
WQDE G+ IE DF K+ +YC + VIAHT M
Sbjct: 137 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 158 bits (383), Expect = 5e-39
Identities = 67/83 (80%), Positives = 78/83 (93%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 213
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 214 DRPGSKINKKEIVEAVTIIETPP 282
D+PGSK+NKKE+VEAVTI+ETPP
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPP 83
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/59 (47%), Positives = 34/59 (57%)
Frame = +2
Query: 221 PVQKSTRKXXXXXXXXXXXXXMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 397
P K +K MV GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 63 PGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = +2
Query: 581 WQDELGRXSIEKDFXKMIRYCXVVGVIAHTXMKLL 685
WQDE G+ IE DF K+ +YC + VIAHT MK+L
Sbjct: 137 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKIL 171
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 158 bits (383), Expect = 5e-39
Identities = 67/83 (80%), Positives = 78/83 (93%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 213
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 214 DRPGSKINKKEIVEAVTIIETPP 282
D+PGSK+NKKE+VEAVTI+ETPP
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPP 83
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/59 (47%), Positives = 34/59 (57%)
Frame = +2
Query: 221 PVQKSTRKXXXXXXXXXXXXXMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 397
P K +K MV GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 63 PGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +2
Query: 581 WQDELGRXSIEKDFXKMIRYCXVVGVIAHTXM 676
WQDE G+ IE DF K+ +YC + VIAHT M
Sbjct: 137 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 158 bits (383), Expect = 5e-39
Identities = 67/83 (80%), Positives = 78/83 (93%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 213
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 214 DRPGSKINKKEIVEAVTIIETPP 282
D+PGSK+NKKE+VEAVTI+ETPP
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPP 83
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/59 (47%), Positives = 34/59 (57%)
Frame = +2
Query: 221 PVQKSTRKXXXXXXXXXXXXXMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 397
P K +K MV GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 63 PGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = +2
Query: 581 WQDELGRXSIEKDFXKMIRYCXVVGVIAHTXMKLL 685
WQDE G+ IE DF K+ +YC + VIAHT MK+L
Sbjct: 137 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKIL 171
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 63.7 bits (148), Expect = 2e-10
Identities = 27/34 (79%), Positives = 30/34 (88%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 135
MSHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = +2
Query: 581 WQDELGRXSIEKDFXKMIRYCXVVGVIAHTXMKLL 685
WQDE G+ IE DF K+ +YC + VIAHT MK+L
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKIL 73
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 63.7 bits (148), Expect = 2e-10
Identities = 27/34 (79%), Positives = 30/34 (88%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 135
MSHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = +2
Query: 581 WQDELGRXSIEKDFXKMIRYCXVVGVIAHTXMKLL 685
WQDE G+ IE DF K+ +YC + VIAHT MK+L
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKIL 73
>Z49907-10|CAC42250.1| 875|Caenorhabditis elegans Hypothetical
protein B0491.8b protein.
Length = 875
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 261 HHHRDSSXWFVSVLLDTLRPLMD 329
HHH+ W SV+ D R L+D
Sbjct: 19 HHHKPKKSWVRSVMSDVKRSLLD 41
>Z49907-9|CAA90092.1| 880|Caenorhabditis elegans Hypothetical
protein B0491.8a protein.
Length = 880
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 261 HHHRDSSXWFVSVLLDTLRPLMD 329
HHH+ W SV+ D R L+D
Sbjct: 19 HHHKPKKSWVRSVMSDVKRSLLD 41
>Z48367-7|CAC42266.1| 875|Caenorhabditis elegans Hypothetical
protein B0491.8b protein.
Length = 875
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 261 HHHRDSSXWFVSVLLDTLRPLMD 329
HHH+ W SV+ D R L+D
Sbjct: 19 HHHKPKKSWVRSVMSDVKRSLLD 41
>Z48367-6|CAA88325.1| 880|Caenorhabditis elegans Hypothetical
protein B0491.8a protein.
Length = 880
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 261 HHHRDSSXWFVSVLLDTLRPLMD 329
HHH+ W SV+ D R L+D
Sbjct: 19 HHHKPKKSWVRSVMSDVKRSLLD 41
>AF319613-1|AAG49523.1| 880|Caenorhabditis elegans CLC-type
chloride channel CLH-2b protein.
Length = 880
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 261 HHHRDSSXWFVSVLLDTLRPLMD 329
HHH+ W SV+ D R L+D
Sbjct: 19 HHHKPKKSWVRSVMSDVKRSLLD 41
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,468,721
Number of Sequences: 27780
Number of extensions: 349837
Number of successful extensions: 739
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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