Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_L11
         (838 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113...    33   0.21 
07_03_0042 - 12731228-12731362,12731984-12732046,12732136-127322...    31   0.86 
08_02_1276 + 25811020-25811512,25812134-25812541,25814682-258148...    31   1.1  
07_01_0116 - 855122-855352,856733-857059,857095-858481,858636-85...    30   2.6  
06_03_0074 - 16233681-16233981,16234258-16234670,16235240-16235440     30   2.6  
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548...    29   6.1  
04_04_1212 - 31786063-31786195,31786275-31786398,31786486-317865...    29   6.1  

>06_03_0097 - 16607936-16608712,16610114-16610320,16611220-16611336,
            16611409-16611690,16611811-16612294,16612791-16612929,
            16613138-16613243,16613396-16613562,16613632-16613707,
            16614173-16614321,16614813-16614874,16615232-16615335,
            16616856-16616950,16617046-16617136,16617785-16617922
          Length = 997

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 17/53 (32%), Positives = 32/53 (60%)
 Frame = +1

Query: 265  KYSKKKHYADQNTSSGTPQERECSIRKSCNNVSVTSXGRSEPRRNRHILRSGS 423
            KY K++H A+++ S  + ++ +     S ++ S +   RS  RR+RH +RSG+
Sbjct: 859  KYEKQEHRAEKSRSRSSHRQTQSG---SLDSDSTSDQHRSRERRSRHKIRSGT 908


>07_03_0042 -
           12731228-12731362,12731984-12732046,12732136-12732207,
           12732783-12732855,12732937-12733005,12733375-12733439,
           12733677-12734087,12734186-12734230,12734338-12734413,
           12734555-12734629,12735101-12735207,12736573-12736635
          Length = 417

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 158 TSFYLVFNKIMSTLKLTSEVRSGLYSHWRD 247
           TS Y +FNK+ STL   S V SG ++  RD
Sbjct: 164 TSGYTLFNKLRSTLSSASPVLSGAFAKLRD 193


>08_02_1276 +
           25811020-25811512,25812134-25812541,25814682-25814878,
           25815412-25815575,25815960-25816056,25816102-25816179,
           25817840-25817919,25817961-25818082,25818203-25818276
          Length = 570

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 615 SSSSHWLKNDSCRNYPLVMTDPLFDRLCDRSFT*DFLIS 499
           SSS  W+++D    +PL   D L+++ C+R    D +I+
Sbjct: 120 SSSREWMESDVGDGFPLCGFDSLYEKYCERMAVFDKMIT 158


>07_01_0116 -
           855122-855352,856733-857059,857095-858481,858636-858895
          Length = 734

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 678 SKISATIHSLMSW-FTVLVPYNSSSSHWLKNDS 583
           S  SA + SL+S  FTVL  Y+++  HWL+  S
Sbjct: 258 SSTSAAVWSLVSAAFTVLTAYSTTKLHWLQGGS 290


>06_03_0074 - 16233681-16233981,16234258-16234670,16235240-16235440
          Length = 304

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 280 KHYADQNTSSGTPQERECSIRKSCNNVSVTSXGRSE 387
           K  A +  +   P+   C  R+ CN + VTS GRSE
Sbjct: 185 KRPAVKRRTGAPPRSITCRSREICNVIQVTSMGRSE 220


>06_03_1508 -
           30653967-30654245,30654342-30654631,30654773-30654841,
           30654854-30654921,30655016-30655492,30655578-30655874,
           30655974-30656824,30656917-30656990,30657270-30657292,
           30657709-30657772,30658098-30658370,30658511-30658587,
           30658686-30658912
          Length = 1022

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -3

Query: 785 CVNFF-PHG-TCLLSCLLACWSPKSS 714
           C  FF PHG TC++ C L  + P+S+
Sbjct: 179 CAGFFCPHGLTCMIPCPLGAYCPEST 204


>04_04_1212 -
           31786063-31786195,31786275-31786398,31786486-31786597,
           31786691-31786822,31786929-31787111,31787351-31787479,
           31787618-31787788,31788142-31788244,31788628-31788737,
           31789158-31789265,31789337-31789512,31790082-31790352,
           31790524-31790738,31791042-31792574,31792665-31792728,
           31793171-31793251
          Length = 1214

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +2

Query: 266 STAKKNIMQIKILVVVRHKNVNAAYVSRVITSLLPRMEDLSH--EEIVTSYVLAHVAQFD 439
           S AK+  M I  + V          +  V+TSL   ++DL H  E I+  Y   +++   
Sbjct: 759 SVAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKYDCLNLSNVK 818

Query: 440 CRRHHMAFTNGNT 478
              +  +FT GNT
Sbjct: 819 DLHYRQSFTWGNT 831


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,474,419
Number of Sequences: 37544
Number of extensions: 388075
Number of successful extensions: 932
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)