Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_L11
         (838 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein pr...    55   1e-07
AY119653-1|AAM50307.1|  682|Drosophila melanogaster RE71324p pro...    29   7.9  
AE014297-4280|AAF56827.1|  682|Drosophila melanogaster CG14528-P...    29   7.9  

>X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein
           protein.
          Length = 1053

 Score = 54.8 bits (126), Expect = 1e-07
 Identities = 27/73 (36%), Positives = 40/73 (54%)
 Frame = +2

Query: 332 AAYVSRVITSLLPRMEDLSHEEIVTSYVLAHVAQFDCRRHHMAFTNGNTTRNKLLQEIKK 511
           A Y SR++T L  +  ++  EEI  + VLAH+A  D R   + FT+   TR+KL  E+K 
Sbjct: 124 AVYASRLVTQLTTKWRNMEIEEIAVTTVLAHMANIDSRLQRVLFTSNVRTRSKLQAELKA 183

Query: 512 SQVKLRSHNRSNN 550
                + H R +N
Sbjct: 184 FTFDKKRHARDDN 196


>AY119653-1|AAM50307.1|  682|Drosophila melanogaster RE71324p
           protein.
          Length = 682

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +2

Query: 230 YSHWRDVFEHVRSTAKKNIMQIKILVVVRHKNVNAAYVSRV-ITSLLPRMEDLSHEEIVT 406
           +S WR V +      K+ I+ ++I+  +R+ +VN  Y+S+    ++  R+ +L  EE+ T
Sbjct: 161 FSWWRTVAQIQHKYGKQIIIGLEIMHDIRNTSVNRVYISQPDFKTINTRLTNLM-EEVRT 219

Query: 407 S 409
           S
Sbjct: 220 S 220


>AE014297-4280|AAF56827.1|  682|Drosophila melanogaster CG14528-PA
           protein.
          Length = 682

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +2

Query: 230 YSHWRDVFEHVRSTAKKNIMQIKILVVVRHKNVNAAYVSRV-ITSLLPRMEDLSHEEIVT 406
           +S WR V +      K+ I+ ++I+  +R+ +VN  Y+S+    ++  R+ +L  EE+ T
Sbjct: 161 FSWWRTVAQIQHKYGKQIIIGLEIMHDIRNTSVNRVYISQPDFKTINTRLTNLM-EEVRT 219

Query: 407 S 409
           S
Sbjct: 220 S 220


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,192,761
Number of Sequences: 53049
Number of extensions: 695913
Number of successful extensions: 2248
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2248
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3983256888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)