Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_L11
         (838 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016435-6|AAB65882.1|  213|Caenorhabditis elegans Hypothetical ...    32   0.58 
AL031633-20|CAC42372.2|  497|Caenorhabditis elegans Hypothetical...    28   7.2  
AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative guan...    28   7.2  
AC024817-8|AAU05551.1|  535|Caenorhabditis elegans Hypothetical ...    28   7.2  
AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical ...    28   7.2  
U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate fi...    28   9.5  

>AF016435-6|AAB65882.1|  213|Caenorhabditis elegans Hypothetical
           protein F59D6.7 protein.
          Length = 213

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -2

Query: 672 ISATIHSLMSWFTVLVPYNSSSSHWLKNDSCRNYPLVMTDPLFDRLCDRSFT 517
           IS   H ++  +T     + +   +L  D   N P +  +PL DR+ D  FT
Sbjct: 39  ISVNKHQILRLYTRFASLDKNGQGYLSRDDFLNVPELAVNPLGDRIIDAFFT 90


>AL031633-20|CAC42372.2|  497|Caenorhabditis elegans Hypothetical
           protein Y39A1A.23 protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 262 SKYSKKKHYADQNTSSGTPQERECSIRKSCNNVSVTSXGRSEPRRNRHI 408
           S  S++K  A   +SSGT + ++CS   S      T+  +S P RNR +
Sbjct: 306 SSSSRRKSKAIDTSSSGTQKSKKCSESLSQEE---TTRSQSLPSRNRFV 351


>AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative
           guanylate-binding protein protein.
          Length = 573

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 478 CISVSKRHVMTSTVKLGNMSQNVRCDDFFVAQIF 377
           C ++     M S+V++ N+SQN++ DD    Q+F
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLF 204


>AC024817-8|AAU05551.1|  535|Caenorhabditis elegans Hypothetical
           protein Y54G2A.2b protein.
          Length = 535

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 478 CISVSKRHVMTSTVKLGNMSQNVRCDDFFVAQIF 377
           C ++     M S+V++ N+SQN++ DD    Q+F
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLF 204


>AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical
           protein Y54G2A.2a protein.
          Length = 573

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 478 CISVSKRHVMTSTVKLGNMSQNVRCDDFFVAQIF 377
           C ++     M S+V++ N+SQN++ DD    Q+F
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLF 204


>U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate
           filament, d protein 2 protein.
          Length = 443

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
 Frame = +2

Query: 266 STAKKNIMQIKILVVVRHKNVNAAYVSRVIT--SLLPRMEDLSHEEIVTSYVLAHVAQFD 439
           STA++NI +++  V+   KN+ +++  RV T      +M+ LS+ E   SY+       D
Sbjct: 124 STAEQNIRKLEPDVISAKKNLESSFQLRVQTREDKRSQMKILSNLEAENSYIKRLTT--D 181

Query: 440 CRRHHMAFTNGNTTRNKLLQEIKKSQVKLRSHNRSNNGS 556
           C       +  ++  ++L  +IK+    LR   RS + S
Sbjct: 182 CEEEK---SRVHSEISRLRSDIKRVHA-LRDKERSKHSS 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,483,244
Number of Sequences: 27780
Number of extensions: 374946
Number of successful extensions: 957
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)