Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_L09
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.29 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.6  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.8  
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    26   6.3  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   8.3  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   8.3  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   8.3  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 240 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 341
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 163 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 65
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 318 FPCVPTQSFVDPIHLKICQYPHGGL 244
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 487 RNWSANVQALYPGDGAVIRYTGAESVVPRRWLQ 389
           RNW   +Q L P D   +RY   +S + + WLQ
Sbjct: 158 RNW---IQHLAPFDYLPVRYANVQSNLIKYWLQ 187


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 498 DNWPNDMQTCPFKXGSTMH 554
           DNW ND+  C  + G  +H
Sbjct: 611 DNWINDISMCHMENGKVIH 629


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = -3

Query: 226 HVSNAGSG*LRFWSXGGDSRSYVARSESIMR----DSDVAFSHSAALAIAQVRRNGNKNN 59
           H+S    G  R ++ GG   SY A+   + R    D+ V ++ SAAL +  + R  + ++
Sbjct: 433 HLSGMTMGMRRMFTQGG---SYSAQERGLCRLEQKDTVVRYAQSAALYLIFLLRRPSADS 489

Query: 58  ISRRH 44
             RRH
Sbjct: 490 GIRRH 494


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = -3

Query: 226 HVSNAGSG*LRFWSXGGDSRSYVARSESIMR----DSDVAFSHSAALAIAQVRRNGNKNN 59
           H+S    G  R ++ GG   SY A+   + R    D+ V ++ SAAL +  + R  + ++
Sbjct: 433 HLSGMTMGMRRMFTQGG---SYSAQERGLCRLEQKDTVVRYAQSAALYLIFLLRRPSADS 489

Query: 58  ISRRH 44
             RRH
Sbjct: 490 GIRRH 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,848,479
Number of Sequences: 5004
Number of extensions: 51514
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)