Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_L09
(894 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 40 2e-05
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 40 2e-05
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 40 3e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 40 4e-05
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 40 4e-05
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 39 5e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 39 5e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 39 7e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 38 9e-05
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 38 2e-04
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 38 2e-04
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 36 5e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 32 0.006
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 28 0.10
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 23 5.0
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 8.7
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 40.3 bits (90), Expect = 2e-05
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +1
Query: 142 STRSSQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW 321
S + +R + + ++ +TL + ++ E + A L++ W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 322 -GCSTWLVSSERLWRPDVVLLN 384
G ++ +LW+PD+++ N
Sbjct: 124 GGVKDLRITPNKLWKPDILMYN 145
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 40.3 bits (90), Expect = 2e-05
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +1
Query: 142 STRSSQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW 321
S + +R + + ++ +TL + ++ E + A L++ W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 322 -GCSTWLVSSERLWRPDVVLLN 384
G ++ +LW+PD+++ N
Sbjct: 124 GGVKDLRITPNKLWKPDILMYN 145
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 229 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 384
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 229 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 384
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 229 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 384
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 229 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 384
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 229 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 384
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 229 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 384
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 39.9 bits (89), Expect = 3e-05
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = +1
Query: 193 IVVNLTLHLRHA---NIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLW 360
+VV L L L N+++ T + L+ W D + W+ E+G T L V SE +W
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 361 RPDVVLLN 384
PD+VL N
Sbjct: 104 LPDIVLYN 111
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 39.5 bits (88), Expect = 4e-05
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 271 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 384
++ +W D +L W+ E+G L V S+ +WRPD+VL N
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYN 115
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 39.5 bits (88), Expect = 4e-05
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 160 RTIGSLPPXSKIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CST 333
R +G+ + + L L L N++ T + ++ W D +L WN ++G T
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYGGVDT 94
Query: 334 WLVSSERLWRPDVVLLN 384
V SE +W PD+VL N
Sbjct: 95 LHVPSEHIWLPDIVLYN 111
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.1 bits (87), Expect = 5e-05
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 190 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 363
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 364 PDVVLLN 384
PD+VL N
Sbjct: 113 PDIVLYN 119
Score = 23.8 bits (49), Expect = 2.2
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = +3
Query: 489 CSLDN--WPNDMQTCPFKXGS 545
CS+D +P D+QTC K GS
Sbjct: 153 CSIDVEFFPYDVQTCVLKLGS 173
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.1 bits (87), Expect = 5e-05
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 190 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 363
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 364 PDVVLLN 384
PD+VL N
Sbjct: 113 PDIVLYN 119
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 38.7 bits (86), Expect = 7e-05
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 271 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 384
++ W D +L WN E+G L V SE +W PD+VL N
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYN 124
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 38.3 bits (85), Expect = 9e-05
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 193 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 369
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 370 VVLLN 384
+L N
Sbjct: 92 TILYN 96
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 37.5 bits (83), Expect = 2e-04
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 199 VNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVV 375
++ L ++H N+ E TV L++ W L+W + E+ ++ V S +W PD+V
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIV 121
Query: 376 L 378
+
Sbjct: 122 M 122
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 37.5 bits (83), Expect = 2e-04
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 190 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWR 363
K+ VN L ++ N+ E ++ L+ W D +L W+ ++ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 364 PDVVLLN 384
PD+VL N
Sbjct: 111 PDIVLFN 117
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 35.9 bits (79), Expect = 5e-04
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 157 QRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTW 336
+R +G+ + LTL ++ ++ E + L++ W D + WN ++G
Sbjct: 39 ERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRD 97
Query: 337 L-VSSERLWRPDVVLLN 384
L + RLW+PDV++ N
Sbjct: 98 LRIPPHRLWKPDVLMYN 114
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 32.3 bits (70), Expect = 0.006
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 232 IRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 384
I E + T + + +W+D+RL++ G+ + + R+W+PD N
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
Score = 25.8 bits (54), Expect = 0.53
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 492 SLDNWPNDMQTCPFKXGS 545
+L+N+P D Q CP + GS
Sbjct: 133 NLENFPMDTQRCPLQFGS 150
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 28.3 bits (60), Expect = 0.10
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 274 QMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 384
+ +W D RLS+ S + ER+WRPD N
Sbjct: 90 RQSWRDSRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
Score = 23.4 bits (48), Expect = 2.8
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +3
Query: 411 TLSAPVYLITAPSPG*SAWT--LALQFLCSLD--NWPNDMQTCPFKXGS 545
T++ P L+ G ++ L ++ C ++ N+P D Q+CP GS
Sbjct: 134 TITVPNKLLRISQDGDILYSMRLTIKAKCPMELRNFPMDRQSCPLILGS 182
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 22.6 bits (46), Expect = 5.0
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +3
Query: 459 SAWTLALQFLCSLDNWPNDMQTCPFKXGSTMH 554
S TL L +++P+D Q C S H
Sbjct: 124 SKLTLVLSCAMKFESYPHDTQICSMMIESLSH 155
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 8.7
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 336 PSAAAPFPCVPTQS 295
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,534
Number of Sequences: 438
Number of extensions: 4182
Number of successful extensions: 62
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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