Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_L08
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    33   0.036
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    27   3.1  
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    27   3.1  
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    26   5.5  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    26   5.5  
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    26   7.2  

>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 33.5 bits (73), Expect = 0.036
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 489 IXSGINFDKFDHIAXQVSGENPPXPIESFETANLXKYVLXNV 614
           + +GINF+K+D I  +VSG     P+  F +  L  ++L N+
Sbjct: 144 VSTGINFEKYDDIPVEVSG-GDIEPVNEFTSPPLNSHLLQNI 184



 Score = 29.9 bits (64), Expect = 0.44
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +1

Query: 622 AGYXKPTPIQKNAIP 666
           +GY +PTP+QKN+IP
Sbjct: 187 SGYTQPTPVQKNSIP 201


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -2

Query: 477 RFPSHHLLXLEAHRLPASSFPRFP 406
           R PS     LE H LP SS P FP
Sbjct: 146 RTPSRSSNTLELHSLPISSSPSFP 169


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 537 VSGENPPXPIESFETANLXKYVLXNV 614
           V G N P P+ +FE A    YVL  V
Sbjct: 112 VHGLNVPKPVTTFEEAGFPNYVLKEV 137


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +1

Query: 625 GYXKPTPIQKNAIPXHXEWXXXDGLCPXWXG*NGCXXVPXXNMLLXDP 768
           G+  PTPIQ+ AIP         GL     G      +P    L  +P
Sbjct: 65  GFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNP 112


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 536 SQW*ESSXTYRKFRNCKSXKVCSX*C 613
           ++W E S  + K R C+  K CS  C
Sbjct: 486 NKWEEHSRQFAKCRRCRRTKYCSKEC 511


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 462 DETEIFISTIXSGINFDKFDHIAXQVSG--ENPPXPIE 569
           DE +  +  + + +NF  F HIA  +    E+PP  +E
Sbjct: 179 DEVQNGVLNVMNRLNFYSFGHIAENIGAIFESPPVYVE 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,106,164
Number of Sequences: 5004
Number of extensions: 28948
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)