Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_L08
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973...    39   0.004
03_06_0365 - 33399422-33399925,33400470-33400583,33400762-334009...    39   0.005
06_03_0674 + 23422004-23422552,23423295-23423369,23424360-234244...    36   0.029
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553...    31   0.82 
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899...    24   7.0  

>11_06_0300 +
           22095396-22096145,22096261-22096344,22097062-22097304,
           22098535-22098702,22098895-22099008,22099378-22099890
          Length = 623

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +3

Query: 462 DETEIFISTIXSGINFDKFDHIAXQVSGENPPXPIESFETANLXKYVLXNV 614
           DE E+F +   +GINFD ++ I  + SG   P P+ +F   +L + +  N+
Sbjct: 120 DEPEVFDAHQNTGINFDAYEDIPVETSGREVPPPVGTFAEIDLGQALNDNI 170


>03_06_0365 -
           33399422-33399925,33400470-33400583,33400762-33400929,
           33401305-33401547,33402148-33402231,33402323-33403098,
           33404423-33404636
          Length = 700

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +3

Query: 462 DETEIFISTIXSGINFDKFDHIAXQVSGENPPXPIESFETANLXKYVLXNV 614
           + TE+   T  +GINFD ++ I  + SG + P P+ +F   +L   +  N+
Sbjct: 202 EATEVDFDTANTGINFDAYEDIPVETSGHDVPPPVNTFAEIDLGDALNENI 252


>06_03_0674 +
           23422004-23422552,23423295-23423369,23424360-23424443,
           23424749-23424991,23425348-23425515,23425608-23425727,
           23426372-23427016
          Length = 627

 Score = 36.3 bits (80), Expect = 0.029
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = +3

Query: 510 DKFDHIAXQVSGENPPXPIESFETANLXKYVLXNVLK 620
           DK+D I  +VSGE+ P P + FE A L + VL NV +
Sbjct: 66  DKYD-IPVEVSGEDVPPPADGFEAAGLVEAVLRNVAR 101


>07_01_0725 -
           5532803-5533324,5533631-5533657,5534285-5534398,
           5534564-5534731,5535951-5536193,5537178-5537261,
           5537357-5538117,5539637-5539730,5540633-5540899,
           5541311-5541316,5542538-5542657
          Length = 801

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +3

Query: 447 PEXTNDETEIFISTIXSGINFDKFDHIAXQVSGENPPXPIESFETANLXKYVLXNV 614
           P   ++  E+      +GINF+ ++ I  + SG + P P  +F   +L   +  N+
Sbjct: 283 PFANSEAAEVDFEGENTGINFEAYEDIPVETSGHDVPPPANTFAEIDLGDALNENI 338


>05_05_0155 +
          22787658-22787930,22788029-22788096,22789600-22789915,
          22790207-22790323
          Length = 257

 Score = 23.8 bits (49), Expect(2) = 7.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 71 APQQLHRNHPSHHP 30
          AP   H  HP HHP
Sbjct: 25 APPPPHLRHPHHHP 38



 Score = 23.0 bits (47), Expect(2) = 7.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 56 HRNHPSHHPLP 24
          H  HP HHP P
Sbjct: 52 HHPHPPHHPHP 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,263,279
Number of Sequences: 37544
Number of extensions: 200803
Number of successful extensions: 538
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)