Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_L08
         (808 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and bel...    44   2e-04
AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and bel...    44   2e-04
AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and bel...    44   2e-04
AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical...    42   7e-04
Z29115-1|CAA82362.1|  489|Caenorhabditis elegans Hypothetical pr...    29   3.9  

>AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform c protein.
          Length = 660

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 22/50 (44%), Positives = 31/50 (62%)
 Frame = +3

Query: 465 ETEIFISTIXSGINFDKFDHIAXQVSGENPPXPIESFETANLXKYVLXNV 614
           E+ +F  T  SGINFDK+++I  +VSG++ P  IE F  A     V+ NV
Sbjct: 106 ESNLFHRT-DSGINFDKYENIPVEVSGDSVPAAIEHFNEAGFGPAVMENV 154



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +1

Query: 622 AGYXKPTPIQKNAIP 666
           +GY KPTP+QK++IP
Sbjct: 157 SGYSKPTPVQKHSIP 171


>AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform b protein.
          Length = 644

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 22/50 (44%), Positives = 31/50 (62%)
 Frame = +3

Query: 465 ETEIFISTIXSGINFDKFDHIAXQVSGENPPXPIESFETANLXKYVLXNV 614
           E+ +F  T  SGINFDK+++I  +VSG++ P  IE F  A     V+ NV
Sbjct: 90  ESNLFHRT-DSGINFDKYENIPVEVSGDSVPAAIEHFNEAGFGPAVMENV 138



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +1

Query: 622 AGYXKPTPIQKNAIP 666
           +GY KPTP+QK++IP
Sbjct: 141 SGYSKPTPVQKHSIP 155


>AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform a protein.
          Length = 641

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 22/50 (44%), Positives = 31/50 (62%)
 Frame = +3

Query: 465 ETEIFISTIXSGINFDKFDHIAXQVSGENPPXPIESFETANLXKYVLXNV 614
           E+ +F  T  SGINFDK+++I  +VSG++ P  IE F  A     V+ NV
Sbjct: 87  ESNLFHRT-DSGINFDKYENIPVEVSGDSVPAAIEHFNEAGFGPAVMENV 135



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +1

Query: 622 AGYXKPTPIQKNAIP 666
           +GY KPTP+QK++IP
Sbjct: 138 SGYSKPTPVQKHSIP 152


>AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.19 protein.
          Length = 643

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = +3

Query: 465 ETEIFISTIXSGINFDKFDHIAXQVSGENPPXPIESFETANLXKYVLXNV 614
           E E+F   + SGINFDK++ I  + +G++ P PI  F   +L +++  N+
Sbjct: 133 EQELFSGQL-SGINFDKYEEIPVEATGDDVPQPISLFSDLSLHEWIEENI 181



 Score = 31.9 bits (69), Expect = 0.56
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +1

Query: 622 AGYXKPTPIQKNAIPXHXEWXXXDGLCPXWXG*NGCXXVPXXNMLLXDPKDLI 780
           AGY +PTP+QK +IP                G      VP  N +L D  D +
Sbjct: 184 AGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLVNAILQDGPDAV 236


>Z29115-1|CAA82362.1|  489|Caenorhabditis elegans Hypothetical
           protein T26G10.1 protein.
          Length = 489

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 625 GYXKPTPIQKNAIPXHXEWXXXDGLCPXWXG*NGCXXVPXXNMLLXDPK 771
           G+ KP+ IQ+ A+P   +     GL     G  G   +P    LL  P+
Sbjct: 63  GWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQ 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,922,476
Number of Sequences: 27780
Number of extensions: 168964
Number of successful extensions: 403
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)