Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_L07
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   4.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.2  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   8.2  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   8.2  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   8.2  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = -3

Query: 689 CPXXPREVSVLXELALGHLRYSXTDVPPQSNSPPGSVLEPDHAG 558
           C   P   S+   L+   +  +  +   Q NSP  +   P H+G
Sbjct: 30  CTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSG 73


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 407 SSLKNHYFHCFITYSVGRK 463
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 211 PKHELHGXQGTDRFYKLTPS 152
           P+H +H  +  ++ Y +TPS
Sbjct: 383 PQHLIHPGKDINKLYGMTPS 402


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 211 PKHELHGXQGTDRFYKLTPS 152
           P+H +H  +  ++ Y +TPS
Sbjct: 383 PQHLIHPGKDINKLYGMTPS 402


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 211 PKHELHGXQGTDRFYKLTPS 152
           P+H +H  +  ++ Y +TPS
Sbjct: 321 PQHLIHPGKDINKLYGMTPS 340


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 386 VGDRFARSSLKNHYFHCFI 442
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 386 VGDRFARSSLKNHYFHCFI 442
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 414 SDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSP 304
           +D R   SP   TP+ + Y   +E+ +  S F  D+P
Sbjct: 21  NDKRIYLSPR--TPIKNVYKNNIETKNQLSPFNIDTP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,101
Number of Sequences: 438
Number of extensions: 4673
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)