Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_L04
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    37   0.004
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   3.3  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    26   5.8  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    26   7.6  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   7.6  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    26   7.6  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 24/76 (31%), Positives = 39/76 (51%)
 Frame = +2

Query: 329 DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQ 508
           DI   FD + H+ LI  L +     R + +IR  L N  +      T +R +    G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQ 423

Query: 509 GSALSPLLFSLYINDI 556
           GS +SP+L ++Y++ +
Sbjct: 424 GSIVSPILANIYLHQL 439


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 483 VN*PPESRKAPRSPRYYLVCISMIYPGSPETH 578
           +N PPE   +P  P +     S+IYP  P T+
Sbjct: 111 MNPPPEQLDSPCYPHFDQDSSSVIYPSPPSTY 142


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 665  HPGTVVPEVANRHQPHEKRS 724
            HP  VV +VAN + PH K S
Sbjct: 1284 HPERVVLKVANSYYPHSKAS 1303


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = +3

Query: 558 PGSPETHLALFADDTA-IYYSCRK-MSLLHRRLQIAV 662
           PG+ ET   LF+D+ A IY S  K M + H+ +++++
Sbjct: 158 PGNMETTDPLFSDELAEIYLSIHKCMDMRHKYIRVSL 194


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 497 GVPQGSALSPLLFSLYINDI 556
           G+PQGS LS  L   Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 5   GLNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGKIY 151
           G  +++  C+    W E  VI   +  K   E   Y P S+LS  GK Y
Sbjct: 161 GKISSLPDCLDVTSWTENGVIMGARHKKYAIEGVQYHPESILSEYGKEY 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,553,621
Number of Sequences: 5004
Number of extensions: 78940
Number of successful extensions: 219
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)