Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_L04
(840 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 57 2e-08
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 53 2e-07
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 41 0.001
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 40 0.002
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 31 1.1
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 30 2.0
02_02_0604 - 12064451-12065683,12065729-12065827,12065858-120659... 29 4.6
01_03_0015 + 11669321-11670070 29 4.6
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 29 6.1
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037... 29 6.1
01_01_1010 - 7996921-7997673,7999212-7999399,7999688-7999784,800... 29 6.1
12_02_1182 + 26751345-26751836 28 8.1
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 28 8.1
03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484 28 8.1
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 57.2 bits (132), Expect = 2e-08
Identities = 54/170 (31%), Positives = 75/170 (44%)
Frame = +2
Query: 56 ADVIGIHKPGKPTNETSSYRPISLLSTIGKIYERLLRKRLWNFVTANKILIDEQFGFRSK 235
A ++ I KPGK N YRPISL + KI ++L RL V I +D Q GF
Sbjct: 971 AYIVLIQKPGKE-NTVDGYRPISLQNCSVKILSKVLATRLQR-VFLRMIHLD-QTGFLKG 1027
Query: 236 HSCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVL 415
+ + TE LI R++ T + D KAFD V + L L G P+ +
Sbjct: 1028 RCISENLIYATE--LIQACYRRKCQTIIVKLDFTKAFDSVIWSSLFKILAVRGFPENWIS 1085
Query: 416 IIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPRV 565
I+ LS+ + G R G+ QG LS LF L + + R+
Sbjct: 1086 WIKGLLSSSKSAVLLNGVPGRWICCKKGLLQGDPLSSYLFILVADVLQRL 1135
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 53.2 bits (122), Expect = 2e-07
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 2/164 (1%)
Frame = +2
Query: 80 PGKPTNET-SSYRPISLLSTIGKIYERLLRKRLWNFVTANKILIDEQFGFRSKHSCVQQV 256
P K + ET + +RPISL+ KI +LL RL + K++ D +GF K +Q
Sbjct: 377 PKKTSLETVNDFRPISLMGISLKIVTKLLAGRLQGVIL--KLVSDNHYGF-IKGKTIQDC 433
Query: 257 HRLT-EHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFL 433
E+I +++I L D KAFD + H+ ++ + +MG P + + ++
Sbjct: 434 PAWPFEYIHQCQQSKREIVL--LKLDFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVF 491
Query: 434 SNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPRV 565
S S + G + GV QG LS LLF L + R+
Sbjct: 492 STASSAVLLNGVPGNSFKCRRGVRQGVPLSLLLFVLGAELLQRI 535
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 40.7 bits (91), Expect = 0.001
Identities = 36/146 (24%), Positives = 64/146 (43%)
Frame = +2
Query: 104 SSYRPISLLSTIGKIYERLLRKRLWNFVTANKILIDEQFGFRSKHSCVQQVHRLTEHILI 283
S +RPISL + + KI ++L RL F+ I+ + Q F E +
Sbjct: 185 SKFRPISLCNVLYKIASKVLANRLKLFLP--DIVSEFQSAFVPGRLITDSSLVAYECLNT 242
Query: 284 GLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVE 463
+ + P AL D+ KA+D++ + L L +G + + +++ + R+
Sbjct: 243 IKKQSNKKPFFALKIDMMKAYDRIEWSYLHGCLMRLGFEQDWINTVMRCVTSTRYAIRIN 302
Query: 464 GTRSRPRQLTAGVPQGSALSPLLFSL 541
G + + G+ QG +SP LF L
Sbjct: 303 GELTDTVVPSRGIRQGDPISPYLFLL 328
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 39.9 bits (89), Expect = 0.002
Identities = 33/118 (27%), Positives = 49/118 (41%)
Frame = +2
Query: 212 EQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNM 391
+Q GF K C+ + ++ + RK T + D AKAFD V L L
Sbjct: 5 DQTGFL-KGRCISENLIYATELIQACHARK-CQTLIIKLDFAKAFDSVNWQSLFQILSVK 62
Query: 392 GVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPRV 565
G PD + I++ L + G + G+ QG LSP LF L + + R+
Sbjct: 63 GFPDNWISWIKNLLQTSKSAVLLHGIPGKWITCKKGLRQGDPLSPYLFILVADVLQRL 120
>10_08_0106 +
14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 638 SSATPDRSSHPGTVVPEVANRHQPHEKRSGALQKGSPSEHHFEHPTP 778
SS DRS+ P P+ +R PH + SG+ +K S S+ + + P P
Sbjct: 849 SSQPADRSAPPPPASPDRHSRRSPH-RSSGSGKKRSSSDRYDDLPLP 894
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 30.3 bits (65), Expect = 2.0
Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 1/136 (0%)
Frame = +2
Query: 32 IFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGKIYERLLRKRLWNFVTANKILID 211
+ P + ++ I K +P + YRPISL + + K+ + L RL + + ++
Sbjct: 942 LMPEGVNDTAIVLIPKKDQPI-DLKDYRPISLCNVVYKVVSKCLVNRLRPIL--DDLVSK 998
Query: 212 EQFGFRSKHSCVQQVHRLTEHI-LIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYN 388
EQ F E I N++ A D++KA+D+V L L
Sbjct: 999 EQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLELALNK 1058
Query: 389 MGVPDRLVLIIRDFLS 436
+G R + ++ L+
Sbjct: 1059 LGFAHRWEKVAQNSLT 1074
>02_02_0604 -
12064451-12065683,12065729-12065827,12065858-12065955,
12066782-12066924,12067233-12067729
Length = 689
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 449 RYRVEGTRSRPRQLTAGVPQGSALSPLLFSL 541
R + GT S P + G+ QG LSPLLF L
Sbjct: 216 RIDINGTLSDPFKPMRGLRQGDPLSPLLFVL 246
>01_03_0015 + 11669321-11670070
Length = 249
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 391 GSARQTRAHHTRLLVEPFVSISSRGNSFSP-PSTDRRSPARLRALPVII 534
G +R TR RLL + P PS PA LRALPV++
Sbjct: 88 GDSRTTRRRERRLLRSLAIGAGDDDRDGGPAPSPRGLDPAVLRALPVVV 136
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 464 GTRSRPRQLTAGVPQGSALSP 526
G RSRPR+ AG PQ +A SP
Sbjct: 156 GRRSRPRRCLAGRPQATAGSP 176
>04_04_0233 +
23801944-23802598,23802914-23803047,23803548-23803730,
23804145-23804318
Length = 381
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +3
Query: 612 YSCRKMSLLHRRLQIA----VATLGQWFRKWRIDISPTKSAAVLFKRGR 746
+S L+HR L A VA + R WR + P + AA L RGR
Sbjct: 89 FSALPPELVHRALAAAGASDVAAASRACRAWRDALRPLREAAALHARGR 137
>01_01_1010 -
7996921-7997673,7999212-7999399,7999688-7999784,
8000420-8000767,8001130-8001231,8001432-8001501,
8001747-8001802,8001891-8002010
Length = 577
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 151 RTAP*ETPLEFCYREQNSHRRTVRIPLKTLVRTTSAPPHGAHSD 282
R+ P +T C+ + RRT R+PL+ + +A P H D
Sbjct: 156 RSYPCKTRFRGCFIGKQKSRRTARVPLERSEESRAAIPRRFHWD 199
>12_02_1182 + 26751345-26751836
Length = 163
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Frame = -1
Query: 681 TTVPGWLLRSGVADEAATSSYTSS-R*PCHRRRALDGSPETRGISLIYKLNNNGESAEPC 505
T P R A T +T R CHRRR +D + I KL + E
Sbjct: 70 TKPPSRRPRPSTAKPKKTQEHTGQGRRRCHRRRWMDRRRKRVNCVQIEKLGDESTDGEKN 129
Query: 504 GTPAVS*RG 478
G P S RG
Sbjct: 130 GGPLESSRG 138
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +2
Query: 647 TPDRSSHPGTVVPEVANRHQPHEKRSGALQKGSPSEHHFEHPTP 778
+P RS H P + QP+ S LQ P H +P P
Sbjct: 45 SPSRSFHGYPSAPPPQPQPQPYAHHSAPLQPYPPPPQHHAYPPP 88
>03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484
Length = 663
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +2
Query: 329 DIAKAFDKVWHNGLIYKLYNMG-VPDRLVL 415
D+A+AF+ V H G + +YN+G V +R V+
Sbjct: 230 DVAEAFEVVLHKGEVGHVYNIGTVKERRVI 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,674,721
Number of Sequences: 37544
Number of extensions: 584049
Number of successful extensions: 1716
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1712
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -