Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_L04
(840 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 107 1e-23
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 81 1e-15
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 73 2e-13
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 73 2e-13
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 73 3e-13
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 53 3e-07
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 42 4e-04
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ... 41 0.001
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 38 0.012
Z47067-3|CAA87330.2| 446|Caenorhabditis elegans Hypothetical pr... 33 0.25
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 107 bits (257), Expect = 1e-23
Identities = 70/186 (37%), Positives = 100/186 (53%), Gaps = 3/186 (1%)
Frame = +2
Query: 11 NAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGKIYERLLRKRLWNFVT 190
N +++ I P WK+A+VI I KP K SSYRPISLLS I K+ E+ + KR+ N +
Sbjct: 372 NVSLSTNIIPDKWKKANVIMIPKPKKDPAIASSYRPISLLSPIAKLLEKAILKRIKNSIE 431
Query: 191 ANKILIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALF--FDIAKAFDKVWHN 364
+ Q GF+ +HS V ++T I+ GLN K P A+ D+ AFDKV
Sbjct: 432 SPA----HQHGFKPEHSTTTAVIQVTNDIIGGLN-MKNPPERAIMACLDLRAAFDKVPTK 486
Query: 365 GLIYKLYN-MGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSL 541
L L G+ ++ L + ++L R R + S+ L GVPQGS +SP LF+
Sbjct: 487 KLCNDLMEAQGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTF 546
Query: 542 YINDIP 559
Y+ D+P
Sbjct: 547 YLKDMP 552
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 80.6 bits (190), Expect = 1e-15
Identities = 37/82 (45%), Positives = 56/82 (68%)
Frame = +2
Query: 320 LFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAG 499
++ D +KAFD++ H+ L+ KL ++ L++ + +FLSNRSFR R+ T S + T G
Sbjct: 17 IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCG 76
Query: 500 VPQGSALSPLLFSLYINDIPRV 565
VPQG+ LSPLLF +Y+NDI +
Sbjct: 77 VPQGAVLSPLLFGIYVNDISSI 98
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 73.3 bits (172), Expect = 2e-13
Identities = 52/175 (29%), Positives = 79/175 (45%)
Frame = +2
Query: 38 PAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGKIYERLLRKRLWNFVTANKILIDEQ 217
P WK + I K G N +YRPI LL + K++ + L R+ + + + EQ
Sbjct: 600 PKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQ 656
Query: 218 FGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGV 397
GFR S + +H L + +G R QIP +F D KAFD V H + L G
Sbjct: 657 AGFRRSFSTIDHIHSLQRLLEVG--REYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGA 714
Query: 398 PDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPR 562
+ ++++ N + + R +T GV QG +SP LFS + + R
Sbjct: 715 DGAYIDLLKECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISPNLFSACLEHVFR 768
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 73.3 bits (172), Expect = 2e-13
Identities = 52/175 (29%), Positives = 79/175 (45%)
Frame = +2
Query: 38 PAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGKIYERLLRKRLWNFVTANKILIDEQ 217
P WK + I K G N +YRPI LL + K++ + L R+ + + + EQ
Sbjct: 339 PKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQ 395
Query: 218 FGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGV 397
GFR S + +H L + +G R QIP +F D KAFD V H + L G
Sbjct: 396 AGFRRSFSTIDHIHSLQRLLEVG--REYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGA 453
Query: 398 PDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPR 562
+ ++++ N + + R +T GV QG +SP LFS + + R
Sbjct: 454 DGAYIDLLKECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISPNLFSACLEHVFR 507
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 72.9 bits (171), Expect = 3e-13
Identities = 52/175 (29%), Positives = 79/175 (45%)
Frame = +2
Query: 38 PAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGKIYERLLRKRLWNFVTANKILIDEQ 217
P WK + I K G N +YRPI LL + K++ + L R+ + + + EQ
Sbjct: 429 PKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQ 485
Query: 218 FGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGV 397
GFR S + +H L + +G R QIP +F D KAFD V H + L G
Sbjct: 486 AGFRRSFSTIDHIHSLQRLLEVG--REYQIPLTLVFIDFKKAFDTVEHQAIWKSLDEQGA 543
Query: 398 PDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPR 562
+ ++++ N + + R +T GV QG +SP LFS + + R
Sbjct: 544 DGAYIDLLKECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISPNLFSACLEHVFR 597
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 52.8 bits (121), Expect = 3e-07
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +2
Query: 338 KAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEG-TRSRPRQLTAGVPQGS 514
KAFD+V H+ L+ KL++ G+ DFLS+R+F +V +++GVP+GS
Sbjct: 2 KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGS 61
Query: 515 ALSPLLFSLYINDI 556
P LF ++IN +
Sbjct: 62 VSGPFLFLIFINSL 75
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +2
Query: 377 KLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQ-LTAGVPQGSALSPLLFSLYIND 553
KL G+ ++FL NR+F ++ S+ +++GVPQGS PLLF L+IN+
Sbjct: 839 KLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINN 898
Query: 554 I 556
+
Sbjct: 899 L 899
>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
protein Y113G7B.12 protein.
Length = 1042
Score = 41.1 bits (92), Expect = 0.001
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +2
Query: 320 LFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRV-EGTRSRPRQLTA 496
+ F ++ AFDKV H LI KL + V L R +S ++F +V + S
Sbjct: 890 IHFKLSTAFDKVPHEFLISKLNDFNVHPTLRNWFRKLMSPKTFSVQVNDHLESEKHNCQI 949
Query: 497 GVPQGSALSPLLFSLYINDI 556
G P+GS +F ++IN +
Sbjct: 950 GAPRGSESRQFMFLVFINSL 969
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 37.5 bits (83), Expect = 0.012
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = +2
Query: 320 LFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAG 499
+F D KAFD V H + L G + + ++++ N + + R +T G
Sbjct: 40 VFIDFKKAFDSVEHQAIWKSLDEQGADEAYIDLLKECYKNCTTNF-TPFLRPITVPVTKG 98
Query: 500 VPQGSALSPLLFSLYINDIPR 562
V QG +SP LFS + + R
Sbjct: 99 VRQGDPISPNLFSACLEHVFR 119
>Z47067-3|CAA87330.2| 446|Caenorhabditis elegans Hypothetical
protein C43C3.3 protein.
Length = 446
Score = 33.1 bits (72), Expect = 0.25
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Frame = +3
Query: 384 TTWECQTDSCSSYE-TSCRTVRFDIE*RELVLAP------VN*PPESRKAPRSPRYYLVC 542
TT TD S + T+ TV IE ELV +P V+ P E R+ P +
Sbjct: 317 TTRSAPTDDNGSLDLTNSLTVVSRIESAELVASPISQPTIVDTPSEQRRDPCPKSSNMGF 376
Query: 543 ISMIYPGSPETHLALFADDTAIYYSCRKMSL 635
I +I GS + L LF+ AIY+ C+ S+
Sbjct: 377 IPLIIMGSLAS-LLLFSAGAAIYFGCKLKSM 406
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,120,636
Number of Sequences: 27780
Number of extensions: 465633
Number of successful extensions: 1334
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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