Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_L03
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191...    30   2.7  
11_01_0114 - 886404-887111                                             29   4.7  
07_01_1018 - 8664851-8665495,8665525-8665935,8666374-8666580           28   8.2  

>05_07_0146 +
           28018236-28018580,28018670-28018777,28018984-28019148,
           28019269-28019736,28019823-28019936,28020038-28020715
          Length = 625

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/43 (39%), Positives = 28/43 (65%)
 Frame = -1

Query: 471 VSNGGINAYKLSSGTRVSVPLVDDEGVSSSKEESNKAPASLAM 343
           ++ G +   + +SG+  S+  VDD GVSS+ EE  +A A+LA+
Sbjct: 114 INMGLLVGRRRNSGSEESI--VDDGGVSSNDEEHREAKAALAV 154


>11_01_0114 - 886404-887111
          Length = 235

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 392 TPSSSTNGTETLVPEDNLYALMPPFETFLNVDKTARLR 505
           T +++ NG+ +++P   + A  PPF T  + D  +R R
Sbjct: 5   TAAAAGNGSGSILPTHTIAATAPPFRTHKDADLESRRR 42


>07_01_1018 - 8664851-8665495,8665525-8665935,8666374-8666580
          Length = 420

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -1

Query: 576 SPDAVLLITAPMISSPVFTLSKKCLNLAVLSTFKNVSNGGINAYKLSSGTRVSV 415
           +P+A      P +++P  TL  + L +    TFK V+N  +  +   S   V++
Sbjct: 13  NPEAFFQSVTPRVAAPQKTLPTEKLAVLAPQTFKIVANKALREFAAPSADNVAI 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,728,599
Number of Sequences: 37544
Number of extensions: 393683
Number of successful extensions: 765
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)