Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_L02
         (866 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1460 + 33764106-33764303,33764675-33766201                       31   1.6  
11_08_0086 + 28268227-28270008                                         29   6.4  
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    28   8.4  
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277...    28   8.4  

>04_04_1460 + 33764106-33764303,33764675-33766201
          Length = 574

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 74  TVFSSLDAIASAGRMRKRNITVPHDRXAPRQRTIGSLPP 190
           ++FSS+  +  A   RKR +T+PH R A +Q  +   PP
Sbjct: 223 SIFSSVARVVVAS-CRKRRLTLPHPRDARQQEAVLYNPP 260


>11_08_0086 + 28268227-28270008
          Length = 593

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 5   GFTRDSFNRSVVIKCRRLILFLSTVFSSLDA 97
           G T DS+  S + + R ++L+ S +F  LDA
Sbjct: 453 GITNDSYGASFLSRFRAVLLYYSALFDILDA 483


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 247 VRVHRADTGRSSNELDRQTTELERRG 324
           V+ H  +  R S EL+RQ  ELER+G
Sbjct: 89  VQRHGEELERQSRELERQREELERQG 114


>02_05_0822 +
           32025992-32026696,32027237-32027314,32027547-32027713,
           32027811-32027885,32028624-32028742,32028908-32029204,
           32029275-32029362,32029467-32029572,32029727-32029837,
           32030520-32030683,32031237-32031357,32031958-32032182,
           32032267-32032457,32032658-32032825,32032911-32033016,
           32033301-32033438,32033533-32033697,32033777-32033980,
           32034341-32034535,32034603-32034674,32034797-32034949
          Length = 1215

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 371 PPQAFR-GHQPSAAAPFPLRSNSVVCRSNS 285
           PP+ FR GH P AAAP PLR++     S S
Sbjct: 32  PPEKFRSGHLPRAAAP-PLRTDDGSVASGS 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,131,599
Number of Sequences: 37544
Number of extensions: 360539
Number of successful extensions: 885
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)