Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_L02
(866 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 27 0.22
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.30
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.30
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 27 0.30
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.39
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.39
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.39
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.39
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.39
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.39
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.39
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.39
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 26 0.52
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 25 0.68
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 25 0.90
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 24 2.1
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 2.8
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 2.8
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 6.4
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 22 6.4
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 22 8.4
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 27.1 bits (57), Expect = 0.22
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 330 GCSTWLVSSERLWRPDVVLLN 392
G T V SE +W PD+VL N
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYN 111
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 26.6 bits (56), Expect = 0.30
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 348 VSSERLWRPDVVLLN 392
V S+ +WRPD+VL N
Sbjct: 105 VPSDHIWRPDIVLYN 119
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 26.6 bits (56), Expect = 0.30
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 348 VSSERLWRPDVVLLN 392
V S+ +WRPD+VL N
Sbjct: 105 VPSDHIWRPDIVLYN 119
Score = 21.8 bits (44), Expect = 8.4
Identities = 10/39 (25%), Positives = 15/39 (38%)
Frame = +1
Query: 436 VSNXGSXSWIKRLDISTPISMPVDXXPNDXHTCTXXFGS 552
+ + G W + + V+ P D TC FGS
Sbjct: 135 IYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGS 173
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 26.6 bits (56), Expect = 0.30
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 348 VSSERLWRPDVVLLN 392
V S+ +WRPD+VL N
Sbjct: 101 VPSDHIWRPDIVLYN 115
Score = 21.8 bits (44), Expect = 8.4
Identities = 10/35 (28%), Positives = 13/35 (37%)
Frame = +1
Query: 448 GSXSWIKRLDISTPISMPVDXXPNDXHTCTXXFGS 552
G W + + V+ P D TC FGS
Sbjct: 135 GRVEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGS 169
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.39
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 278 LQMNWIDKRLSWNAGEMG 331
L++ W+D L WN E G
Sbjct: 39 LKLEWVDYNLQWNESEYG 56
Score = 23.0 bits (47), Expect = 3.6
Identities = 5/16 (31%), Positives = 13/16 (81%)
Frame = +3
Query: 348 VSSERLWRPDVVLLNA 395
++ +LW+PD+++ N+
Sbjct: 63 ITPNKLWKPDILMYNS 78
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.39
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 278 LQMNWIDKRLSWNAGEMG 331
L++ W+D L WN E G
Sbjct: 39 LKLEWVDYNLQWNESEYG 56
Score = 23.0 bits (47), Expect = 3.6
Identities = 5/16 (31%), Positives = 13/16 (81%)
Frame = +3
Query: 348 VSSERLWRPDVVLLNA 395
++ +LW+PD+++ N+
Sbjct: 63 ITPNKLWKPDILMYNS 78
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.39
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 278 LQMNWIDKRLSWNAGEMG 331
L++ W+D L WN E G
Sbjct: 39 LKLEWVDYNLQWNESEYG 56
Score = 23.0 bits (47), Expect = 3.6
Identities = 5/16 (31%), Positives = 13/16 (81%)
Frame = +3
Query: 348 VSSERLWRPDVVLLNA 395
++ +LW+PD+++ N+
Sbjct: 63 ITPNKLWKPDILMYNS 78
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.39
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 278 LQMNWIDKRLSWNAGEMG 331
L++ W+D L WN E G
Sbjct: 39 LKLEWVDYNLQWNESEYG 56
Score = 23.0 bits (47), Expect = 3.6
Identities = 5/16 (31%), Positives = 13/16 (81%)
Frame = +3
Query: 348 VSSERLWRPDVVLLNA 395
++ +LW+PD+++ N+
Sbjct: 63 ITPNKLWKPDILMYNS 78
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.39
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 278 LQMNWIDKRLSWNAGEMG 331
L++ W+D L WN E G
Sbjct: 39 LKLEWVDYNLQWNESEYG 56
Score = 23.0 bits (47), Expect = 3.6
Identities = 5/16 (31%), Positives = 13/16 (81%)
Frame = +3
Query: 348 VSSERLWRPDVVLLNA 395
++ +LW+PD+++ N+
Sbjct: 63 ITPNKLWKPDILMYNS 78
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.39
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 278 LQMNWIDKRLSWNAGEMG 331
L++ W+D L WN E G
Sbjct: 39 LKLEWVDYNLQWNESEYG 56
Score = 23.0 bits (47), Expect = 3.6
Identities = 5/16 (31%), Positives = 13/16 (81%)
Frame = +3
Query: 348 VSSERLWRPDVVLLNA 395
++ +LW+PD+++ N+
Sbjct: 63 ITPNKLWKPDILMYNS 78
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 26.2 bits (55), Expect = 0.39
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 278 LQMNWIDKRLSWNAGEMG 331
L++ W+D L WN E G
Sbjct: 107 LKLEWVDYNLQWNESEYG 124
Score = 23.0 bits (47), Expect = 3.6
Identities = 5/16 (31%), Positives = 13/16 (81%)
Frame = +3
Query: 348 VSSERLWRPDVVLLNA 395
++ +LW+PD+++ N+
Sbjct: 131 ITPNKLWKPDILMYNS 146
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 26.2 bits (55), Expect = 0.39
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 278 LQMNWIDKRLSWNAGEMG 331
L++ W+D L WN E G
Sbjct: 107 LKLEWVDYNLQWNESEYG 124
Score = 23.0 bits (47), Expect = 3.6
Identities = 5/16 (31%), Positives = 13/16 (81%)
Frame = +3
Query: 348 VSSERLWRPDVVLLNA 395
++ +LW+PD+++ N+
Sbjct: 131 ITPNKLWKPDILMYNS 146
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 25.8 bits (54), Expect = 0.52
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 330 GCSTWLVSSERLWRPDVVLLN 392
G + V SE +W PD+VL N
Sbjct: 91 GVTELYVPSEHIWLPDIVLYN 111
Score = 21.8 bits (44), Expect = 8.4
Identities = 12/46 (26%), Positives = 17/46 (36%)
Frame = +1
Query: 415 TTLSXPGVSNXGSXSWIKRLDISTPISMPVDXXPNDXHTCTXXFGS 552
TT++ + G W + + V P D TC FGS
Sbjct: 120 TTMTKAILHYTGKVLWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGS 165
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 25.4 bits (53), Expect = 0.68
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 330 GCSTWLVSSERLWRPDVVLLN 392
G V SE +W PD+VL N
Sbjct: 104 GVEMLYVPSENIWLPDIVLYN 124
Score = 22.2 bits (45), Expect = 6.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +2
Query: 278 LQMNWIDKRLSWNAGEMG 331
++ W D +L WN E G
Sbjct: 86 VEQRWNDYKLKWNPEEYG 103
Score = 21.8 bits (44), Expect = 8.4
Identities = 11/46 (23%), Positives = 18/46 (39%)
Frame = +1
Query: 415 TTLSXPGVSNXGSXSWIKRLDISTPISMPVDXXPNDXHTCTXXFGS 552
T ++ + G SW + + V+ P D +C FGS
Sbjct: 133 TLMTKATLKYTGDVSWKPPAIYKSSCEINVEYFPFDEQSCIMKFGS 178
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 25.0 bits (52), Expect = 0.90
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +2
Query: 206 VNLTLHXRHANXRESESTVRILADLQMNWIDKRLSWNAGE 325
++ L +H N E TV L++ W L+W + E
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSE 101
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.8 bits (49), Expect = 2.1
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +3
Query: 348 VSSERLWRPDVVLLNA 395
+ RLW+PDV++ N+
Sbjct: 100 IPPHRLWKPDVLMYNS 115
Score = 21.8 bits (44), Expect = 8.4
Identities = 6/18 (33%), Positives = 10/18 (55%)
Frame = +2
Query: 278 LQMNWIDKRLSWNAGEMG 331
L++ W D + WN + G
Sbjct: 76 LKLEWNDVNMRWNVSDYG 93
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.4 bits (48), Expect = 2.8
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = +3
Query: 357 ERLWRPDVVLLN 392
+++W+PD+VL N
Sbjct: 106 DKVWKPDIVLFN 117
Score = 22.6 bits (46), Expect = 4.8
Identities = 10/35 (28%), Positives = 14/35 (40%)
Frame = +1
Query: 448 GSXSWIKRLDISTPISMPVDXXPNDXHTCTXXFGS 552
G W+ + ++ V P D TC FGS
Sbjct: 137 GDVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGS 171
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 348 VSSERLWRPDVVLLN 392
V R+WRPD +L N
Sbjct: 82 VPYNRVWRPDTILYN 96
Score = 22.2 bits (45), Expect = 6.4
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +2
Query: 290 WIDKRLSWNAGE 325
W D L WNA E
Sbjct: 62 WTDHHLKWNASE 73
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.2 bits (45), Expect = 6.4
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 357 ERLWRPDVVLLN 392
ER+WRPD N
Sbjct: 115 ERIWRPDTYFYN 126
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 22.2 bits (45), Expect = 6.4
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = +1
Query: 406 PPGTTLSXPGVSNXGSXSWIKRLDISTPISMPVDXXPNDXHTCTXXFGS 552
PP T L V + GS S + + + P D H C FGS
Sbjct: 145 PPTTCL----VFSSGSVSCVPSVKHVAKCATDFSSWPYDTHRCRINFGS 189
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.8 bits (44), Expect = 8.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 230 VSNAGSG*LRFWSAGGDSRSYVXEE 156
V+ AG G + AGG R+Y EE
Sbjct: 571 VAAAGVGGVPVVGAGGGRRAYTEEE 595
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,129
Number of Sequences: 438
Number of extensions: 3456
Number of successful extensions: 46
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -