Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_K23
(821 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 272 3e-74
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 268 8e-73
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 42 8e-05
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 29 1.1
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 28 1.4
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 28 1.8
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 4.3
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.6
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 7.4
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 9.8
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 9.8
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 272 bits (668), Expect = 3e-74
Identities = 130/192 (67%), Positives = 149/192 (77%)
Frame = +1
Query: 136 LGQKMLTSXMETYVYKRRVDGTHVINLRRTWEKLVLAARAVVAIENPADAFVISSRPFGQ 315
+G K L ME YV+KRR DG H+INL +TWEKLVLAAR + IENPAD VISSRP+G
Sbjct: 28 IGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENPADVCVISSRPYGH 87
Query: 316 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 495
RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV DP D Q I EAS+VNIPV
Sbjct: 88 RAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPV 147
Query: 496 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFY 675
IALC+TDS L VD+AIP N K SIGL W+LLAREVLRLRG + R W+V+ DL+FY
Sbjct: 148 IALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFY 207
Query: 676 RDPEESEKDEQQ 711
RDPEE E++E+Q
Sbjct: 208 RDPEEIEREEEQ 219
Score = 26.6 bits (56), Expect = 4.3
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 81 VLALNEEDVTKMLAATTHLGAENV 152
VL ++D+ +LAA +H+G++N+
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNL 33
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 268 bits (656), Expect = 8e-73
Identities = 125/191 (65%), Positives = 148/191 (77%)
Frame = +1
Query: 136 LGQKMLTSXMETYVYKRRVDGTHVINLRRTWEKLVLAARAVVAIENPADAFVISSRPFGQ 315
+G K L M+ YV+KRR DG H++NL +TWEKLVLAAR + IENPAD V+S+R +G
Sbjct: 27 IGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIATIENPADVCVVSTRTYGH 86
Query: 316 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 495
RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL++V DP D Q I EAS+VNIPV
Sbjct: 87 RAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPV 146
Query: 496 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFY 675
IALC+TDS L VDIAIP N K SIGL+W+LLAREVLR+RG L R WDV+ DL+FY
Sbjct: 147 IALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFY 206
Query: 676 RDPEESEKDEQ 708
RDPEE E++E+
Sbjct: 207 RDPEEVEREEE 217
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +3
Query: 69 GGLDVLALNEEDVTKMLAATTHLGAENV 152
G ++L +ED+ ++LAA H+G++N+
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNL 32
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 42.3 bits (95), Expect = 8e-05
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 26/172 (15%)
Frame = +1
Query: 166 ETYVYKRRVDGTHVINLRRTWEKLVLAARAV--VAIENPADAFVISSRPFGQRAVLKFAA 339
+ ++Y +R +G H+I+L +T L A V +A EN F I +R + +V+ A
Sbjct: 72 QPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGIILF-IGTRNGQKDSVVAAAK 129
Query: 340 HTGATPIAGRFTPGAFTN--QIQA----------------------AFREPRLLIVLDPA 447
I R+ PG TN ++Q ++ P L+++L+P
Sbjct: 130 RARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQTDKKPSYVFPDLMVILNPL 189
Query: 448 QDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 603
++ EA ++P I + +TD+ R V IP N S L+ LL+R
Sbjct: 190 ENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.7 bits (61), Expect = 1.1
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +1
Query: 340 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 504
+ A P G T+ I A F+ +P + ++ D + T A + + L
Sbjct: 29 YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87
Query: 505 CNTDSPLRFVDIAIPCNTKSSHSI 576
C+ +S RF D+A+ NTK +H I
Sbjct: 88 CDRNSK-RFADLAVAANTKFTHFI 110
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = -1
Query: 668 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 570
N+S+T +++ SR ST RS STS AN H K E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = +1
Query: 205 VINLRRTWEKLVLAARAVVAIENPADAFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 381
V+++R TW +LV+ + + + N + +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 4.3
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = -3
Query: 468 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DD 289
S GL L R + E F + +S + W T + + G+RG ++ EGP
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP--SA 224
Query: 288 ERISGVLDG 262
+ SGV G
Sbjct: 225 DLHSGVFGG 233
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 574 IGLMWWLLAREVLRLRGVLPRDQRWD 651
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +2
Query: 629 FPVTSAGML--WLICSSTVTLKKVKRM 703
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 9.8
Identities = 6/25 (24%), Positives = 17/25 (68%)
Frame = -2
Query: 289 RTHQRGSRWLRQHEQPEQVFPRYDA 215
R H++ + W ++HE+P+ + +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = +2
Query: 173 MSTNDVLMVPM*STCVVPGKNLFWLLVLS*PSRTPLMRSSSHH 301
M+ N V + + T PG N FW L++ M H+
Sbjct: 920 MTLNPVFQIGLNGTTHSPGNNSFWPLIIRVSESAFKMHKDGHN 962
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,611,138
Number of Sequences: 5004
Number of extensions: 78388
Number of successful extensions: 195
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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