Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_K23
         (821 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.85 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.85 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   7.9  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 656 TTSQRWSRGSTPRSLSTSRANNHHIKP 576
           T +Q WSRG+T  SL  S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 656 TTSQRWSRGSTPRSLSTSRANNHHIKP 576
           T +Q WSRG+T  SL  S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 619 RGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAXXRLW 729
           R +LPR ++  +   LF Y  P  SE ++  +  R+W
Sbjct: 603 RLLLPRGKKEGMPFQLFLYVSPVSSEYNQYNS--RIW 637


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 619 RGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAXXRLW 729
           R +LPR ++  +   LF Y  P  SE ++  +  R+W
Sbjct: 603 RLLLPRGKKEGMPFQLFLYVSPVSSEYNQYNS--RIW 637


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 720 VXGLLFILFTFFRVTVEEQ 664
           + G+LF+LF+F R   + Q
Sbjct: 18  IFGVLFVLFSFLRTRTKLQ 36


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 720 VXGLLFILFTFFRVTVEEQ 664
           + G+LF+LF+F R   + Q
Sbjct: 18  IFGVLFVLFSFLRTRTKLQ 36


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +1

Query: 433 VLDPAQDHQPITEASYVNIPVIALCNTDSP 522
           ++DP ++++   E   + IP++   +   P
Sbjct: 167 IVDPVEENETYDEFDTIRIPIVRSLSKSPP 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,196
Number of Sequences: 438
Number of extensions: 5466
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)