Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_K22
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    27   4.3  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         26   7.5  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    26   7.5  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    25   9.9  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -3

Query: 352 EEVPAKTPMAGQHLRQPE--GEASAVAAHPVRENRADRLDGTDAGRRVRQAARPRLQ 188
           E +P+K P  GQH RQ     + +    H  +E+   +      G+++RQ + P  Q
Sbjct: 742 ESIPSKQPTEGQHARQESLPSQQTTETKHLRKESIPSK--QPSGGQQLRQESLPSQQ 796



 Score = 26.2 bits (55), Expect = 5.7
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -3

Query: 352 EEVPAKTPMAGQHLRQPE--GEASAVAAHPVRENRADRLDGTDAGRRVRQAARPRLQ 188
           E +P+K P  GQH RQ     + +    H +R+        T+ G+  RQ + P  Q
Sbjct: 678 ESIPSKQPTEGQHARQESLPSQQTTETKH-LRKESTPSKQPTE-GQHTRQESLPSQQ 732


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 301 PADADVDRPWVFWPVPL 351
           P   D DRPW  WP+ +
Sbjct: 468 PIPLDWDRPWQAWPITI 484


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +2

Query: 389 HCADRDEEDTAEHTLARCSGFDEQRAALVAVIGEDLSLPRVV 514
           HC     E+    T + C G   Q+    A  GED  LP VV
Sbjct: 14  HCPGPSSENAG--TASACEGCPNQQICASAPRGEDPDLPLVV 53


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
 Frame = +2

Query: 353 KIAGREPTAQCHHCADRDEEDTAEHTLARCSGFDEQRAALVAVIGEDLSLPRVVATMLGS 532
           K    +PT +        ++ TA  + +  S  +E  A   +    D+  P    ++ G+
Sbjct: 274 KFKTAKPTYKRPGMGPGGKDATASSSSSFSSKREEAAAEPSSSTATDIPPPYSTPSVAGA 333

Query: 533 D--ASXKAMLDFCESTISXKEAAXRXRXXSSFPHRSVAVXPGAGGGNTPYVPAPV 691
              ++  A     ++T +  EAA      ++FP   V   P A    TP V APV
Sbjct: 334 SDYSTPSAGYQTVQTTTTTTEAAAAQYPQAAFPPPPVMPQPAAAAVTTP-VAAPV 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,483,130
Number of Sequences: 5004
Number of extensions: 43022
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)