Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_K20
(931 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 32 0.009
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 31 0.020
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 31 0.020
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 28 0.11
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.18
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 27 0.24
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.24
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.24
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 27 0.24
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 27 0.24
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 26 0.56
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 26 0.56
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.74
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.74
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.74
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.74
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.74
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 25 0.74
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 25 0.98
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 25 0.98
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 5.2
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 6.9
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 22 6.9
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 6.9
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 22 9.1
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 22 9.1
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 31.9 bits (69), Expect = 0.009
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 363 PRERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 464
P RLW+PDV++ N+A G Y V NNG+
Sbjct: 101 PPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGT 135
Score = 21.8 bits (44), Expect = 9.1
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +3
Query: 474 HKALGHXHSNXYAVRQLAQRHA 539
H +GH HS+ +A HA
Sbjct: 416 HHTMGHGHSHIHATPHHHHSHA 437
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 30.7 bits (66), Expect = 0.020
Identities = 17/75 (22%), Positives = 32/75 (42%)
Frame = +2
Query: 119 CGRMRKRNITVPHDQTRSSQRTIGTPPPYSKIVVNLTLHXRHANIRESESTVRIQADLQM 298
CGR KR + + +R + ++ +TL + ++ E + A L++
Sbjct: 51 CGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKL 109
Query: 299 NWIDKRLSXNAGEWG 343
W+D L N E+G
Sbjct: 110 EWVDYNLQWNESEYG 124
Score = 27.9 bits (59), Expect = 0.14
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 372 RLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 464
+LW+PD+++ N+A G Y V++NGS
Sbjct: 135 KLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 30.7 bits (66), Expect = 0.020
Identities = 17/75 (22%), Positives = 32/75 (42%)
Frame = +2
Query: 119 CGRMRKRNITVPHDQTRSSQRTIGTPPPYSKIVVNLTLHXRHANIRESESTVRIQADLQM 298
CGR KR + + +R + ++ +TL + ++ E + A L++
Sbjct: 51 CGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKL 109
Query: 299 NWIDKRLSXNAGEWG 343
W+D L N E+G
Sbjct: 110 EWVDYNLQWNESEYG 124
Score = 27.9 bits (59), Expect = 0.14
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 372 RLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 464
+LW+PD+++ N+A G Y V++NGS
Sbjct: 135 KLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 28.3 bits (60), Expect = 0.11
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -3
Query: 197 GESRSYVARSESDHEGQ*CCVFAFCRTSYSTSEEKQVTEYIYSRRHFMP--VXQQCSRIP 24
G+++ YVA G+ CC F T Y + K VT+ I R+ +P C IP
Sbjct: 594 GQAKKYVA-------GEQCCWHCFNCTQYQIRDHKDVTQCISCRQGTVPDETHSACRDIP 646
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.18
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 372 RLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 464
+LW+PD+++ N+A G Y V++NGS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHNGS 98
Score = 24.6 bits (51), Expect = 1.3
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +2
Query: 248 NIRESESTVRIQADLQMNWIDKRLSXNAGEWG 343
++ E + A L++ W+D L N E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 27.1 bits (57), Expect = 0.24
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 363 PRERLWRPDVVLLNAAATTAGDYALR 440
P +++W+PD+VL N A G+Y +R
Sbjct: 104 PPDKVWKPDIVLFNNA---DGNYEVR 126
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.1 bits (57), Expect = 0.24
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 363 PRERLWRPDVVLLNAA 410
P + +WRPD+VL N A
Sbjct: 106 PSDHIWRPDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.1 bits (57), Expect = 0.24
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 363 PRERLWRPDVVLLNAA 410
P + +WRPD+VL N A
Sbjct: 106 PSDHIWRPDIVLYNNA 121
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 27.1 bits (57), Expect = 0.24
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 363 PRERLWRPDVVLLNAA 410
P + +WRPD+VL N A
Sbjct: 102 PSDHIWRPDIVLYNNA 117
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 27.1 bits (57), Expect = 0.24
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 339 GAAALGWCPRERLWRPDVVLLNAA 410
G + + P E +W PD+VL N A
Sbjct: 103 GGVEMLYVPSENIWLPDIVLYNNA 126
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.56
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 363 PRERLWRPDVVLLNAA 410
P R+WRPD +L N A
Sbjct: 83 PYNRVWRPDTILYNNA 98
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 25.8 bits (54), Expect = 0.56
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 357 WCPRERLWRPDVVLLNAA 410
+ P E +W PD+VL N A
Sbjct: 96 YVPSEHIWLPDIVLYNNA 113
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.74
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 372 RLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 464
+LW+PD+++ N+A G Y V+++GS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
Score = 24.6 bits (51), Expect = 1.3
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +2
Query: 248 NIRESESTVRIQADLQMNWIDKRLSXNAGEWG 343
++ E + A L++ W+D L N E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.74
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 372 RLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 464
+LW+PD+++ N+A G Y V+++GS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
Score = 24.6 bits (51), Expect = 1.3
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +2
Query: 248 NIRESESTVRIQADLQMNWIDKRLSXNAGEWG 343
++ E + A L++ W+D L N E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.74
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 372 RLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 464
+LW+PD+++ N+A G Y V+++GS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
Score = 24.6 bits (51), Expect = 1.3
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +2
Query: 248 NIRESESTVRIQADLQMNWIDKRLSXNAGEWG 343
++ E + A L++ W+D L N E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.74
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 372 RLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 464
+LW+PD+++ N+A G Y V+++GS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
Score = 24.6 bits (51), Expect = 1.3
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +2
Query: 248 NIRESESTVRIQADLQMNWIDKRLSXNAGEWG 343
++ E + A L++ W+D L N E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.74
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 372 RLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 464
+LW+PD+++ N+A G Y V+++GS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
Score = 24.6 bits (51), Expect = 1.3
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +2
Query: 248 NIRESESTVRIQADLQMNWIDKRLSXNAGEWG 343
++ E + A L++ W+D L N E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 25.4 bits (53), Expect = 0.74
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 363 PRERLWRPDVVLLNAA 410
P E +W PD+VL N A
Sbjct: 98 PSEHIWLPDIVLYNNA 113
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 25.0 bits (52), Expect = 0.98
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 481 RLDXSTPIXMQLDNWPNDMXTCTFXFGS 564
RL M L+N+P D C FGS
Sbjct: 123 RLTIKAGCPMNLENFPMDTQRCPLQFGS 150
Score = 23.4 bits (48), Expect = 3.0
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = +2
Query: 251 IRESESTVRIQADLQMNWIDKRLSXNAGE 337
I E + T + + +W+D+RL+ G+
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGK 72
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 25.0 bits (52), Expect = 0.98
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 450 SNNGSVSCHKALGH 491
+NNG + CH LGH
Sbjct: 267 NNNGDMFCHTGLGH 280
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.6 bits (46), Expect = 5.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 355 PSAAAPLPCVPTQS 314
PSA AP+P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Score = 22.2 bits (45), Expect = 6.9
Identities = 11/37 (29%), Positives = 11/37 (29%)
Frame = +1
Query: 685 GXXGTSPXXXSXLSVRTXAPGPKPLXGXXPXSPGGAP 795
G G P P P G P P GAP
Sbjct: 19 GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.2 bits (45), Expect = 6.9
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 369 ERLWRPDVVLLN 404
ER+WRPD N
Sbjct: 115 ERIWRPDTYFYN 126
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 22.2 bits (45), Expect = 6.9
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 215 VVNLTLHXRH-ANIRESESTVRIQADLQMNWIDKRLSXN 328
+V + L R A I + + +Q + W+D+RL N
Sbjct: 60 IVRVNLFVRSIATISDIKMEYSVQLTFREQWLDERLRFN 98
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.2 bits (45), Expect = 6.9
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +2
Query: 152 PHDQTRSSQRTIGTPPPYSKIVVN 223
PH + S+ + TPP Y+++ N
Sbjct: 525 PHHEYYDSKSSTETPPSYNQLNYN 548
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.8 bits (44), Expect = 9.1
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +3
Query: 336 SGAAALGWCPRERLWRPDVVLLNAAATTAGDYALRARVSNNGSV 467
+G A+ C +PD++ + A + GD +V NG++
Sbjct: 17 NGTGAVVECQARGNPQPDIIWVRADGSAVGDVPGLRQVLPNGNL 60
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 21.8 bits (44), Expect = 9.1
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = +2
Query: 125 RMRKRNITVPHDQTRSSQRTIGTP 196
R +R PHD+T R + P
Sbjct: 177 RRNERRTPDPHDETAKKPRVLSPP 200
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,564
Number of Sequences: 438
Number of extensions: 4674
Number of successful extensions: 45
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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