Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_K18
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    29   0.82 
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    27   3.3  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   7.6  
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    26   7.6  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    26   7.6  

>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 19/67 (28%), Positives = 28/67 (41%)
 Frame = +3

Query: 411 GPSHAKGAHRTPLEAHQNGAETTRGQPAPPAHHTPTVGFTLHHPRPTASAGLLAEYGSRR 590
           G +HA+  H  P  ++ NGA T      PP++H  +  +     R   S    + Y SR 
Sbjct: 277 GMTHAQPTHN-PTSSYGNGASTNYNASRPPSNHPHSSNYP-SSSRRKPSPDRYSNYSSRG 334

Query: 591 DEHEGRR 611
                RR
Sbjct: 335 SGGRYRR 341


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +3

Query: 42  LLCSGNKQLSSAKSNVKFCVFICDYHGDSVFSRRH---NKSVTIFKRNEENRSL 194
           +L    KQ+S   +      F C+Y  D   ++ H   +    +F RN EN S+
Sbjct: 391 MLAKPTKQISEVLNTFDQAAFTCEYKYDGERAQVHFTEDGKFYVFSRNSENMSV 444


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 420 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 515
           H  G H  P   H    E     P PP HH P
Sbjct: 201 HEPGEHMPPPPMHHKPGEH---MPPPPMHHEP 229



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 420 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 515
           H  G H  P   H    E     P PP HH P
Sbjct: 214 HKPGEHMPPPPMHHEPGEH---MPPPPMHHEP 242



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 420 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 515
           H  G H  P   H    E     P PP HH P
Sbjct: 227 HEPGEHMPPPPMHHEPGEH---MPPPPMHHEP 255



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 420 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 515
           H  G H  P   H    E     P PP HH P
Sbjct: 240 HEPGEHMPPPPMHHEPGEH---MPPPPMHHEP 268



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 420 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 515
           H  G H  P   H    E     P PP HH P
Sbjct: 253 HEPGEHMPPPPMHHEPGEH---MPPPPMHHEP 281



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 420 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 515
           H  G H  P   H    E     P PP HH P
Sbjct: 266 HEPGEHMPPPPMHHEPGEH---MPPPPMHHEP 294



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 420 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 515
           H  G H  P   H    E     P PP HH P
Sbjct: 279 HEPGEHMPPPPMHHEPGEH---MPPPPMHHEP 307



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 420 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 515
           H  G H  P   H    E     P PP HH P
Sbjct: 292 HEPGEHMPPPPMHHEPGEH---MPPPPMHHEP 320



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 420 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 515
           H  G H  P   H    E     P PP HH P
Sbjct: 305 HEPGEHMPPPPMHHEPGEH---MPPPPMHHEP 333


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 513 PTVGFTLHHPRPTASAGLLAEYGSRRDE 596
           P  G+ LH PRPT  A      G R  E
Sbjct: 244 PPEGYLLHDPRPTKRADRAGTRGFRAPE 271


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -1

Query: 506 VSWRCRLSSCCFCSILMGF*GRTVCSFCMRRTT 408
           + WR RL   C  +IL     R  CS   R TT
Sbjct: 244 IPWRGRLGYACLNTILRSMKERVFCSRTCRITT 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,361
Number of Sequences: 5004
Number of extensions: 56482
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)