Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_K17
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    29   1.1  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    28   1.9  
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    27   2.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   3.3  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   3.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.3  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   4.4  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   5.8  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    26   7.6  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    26   7.6  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 4/111 (3%)
 Frame = +3

Query: 348 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 527
           T T   S  +T  +    +S+   Y    + +    +  S P    PVT   C T+  V 
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539

Query: 528 VEGVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 668
                V +TP ++       ++ + +T      Y      P+  +P+  TN
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
 Frame = +3

Query: 360 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 533
           T +N  T  S+P  S+ +              +V + S P    P+T   C T+  +   
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482

Query: 534 GVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 668
              V +TP ++       ++ + +T      Y      P+  +P+  TN
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 604 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPPXRRT 717
           PP PA ++++  SS+P   T +T   TS SI P    T
Sbjct: 370 PPPPASTSSTGTSSSPLLST-STSCTTSTSIPPTGNST 406


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +3

Query: 348 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 518
           TG       +T+ QSL N+S  S I   R     N  A  FPS  S  +P  VDL     
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366

Query: 519 DVTVEGVNVLATPSSS 566
           DV+ E    L+TP  S
Sbjct: 367 DVSDEEQRFLSTPLGS 382


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
 Frame = +1

Query: 607 PSPAISATSTRSSN---PRFHTPTTPD------LTSISINPPXRRTKKE 726
           P P+IS T+T SS       H PTTPD      LT +   PP     K+
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPDHFKLTPLTKLEPQPPSGSPSKK 321


>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 595 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 476
           I A P   +R     AS+ TP+  T+A+ QQ     GI+R
Sbjct: 9   IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 330  RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 443
            R+Y  L  T   ++S    + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +1

Query: 598 IKPPSPAISATSTRSSNPRF-HTPTTPDLTSISINPPXRRTKKEFAPGXKASV 753
           ++PPSP+    S+  S P F   P T   T   +N P    K EF P   A V
Sbjct: 461 VEPPSPSKEIKSSHFSVPEFKFEPKTEATTDKKLNVP----KFEFKPTATADV 509


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 610 SPAISATSTRSSNPRFHTPTTPDLTSIS 693
           S  IS +ST   N  FH PT    TS S
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSS 828


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +3

Query: 411 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 500
           +K  RD YL NLEA  FPS+  +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 629 HQPDHQIPDSIHQ-PPQT*HPFPSIPLXAVLKRSSRRGXKPPLSSEAPSAYLTPS 790
           H  + +I  S    PP +  PF S PL + L RSS +     L  E+P   L  S
Sbjct: 83  HHANTEIDSSSSMLPPPSSDPFSS-PLSSSLHRSSPKRPHDSLGEESPGKLLRTS 136


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 580 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 446
           P  ++E   +  TL  +T+T   V   + +  +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 26  PPLFRSFCRGCFATGFLDDLFMEEIVPLXRFCRFGHSL 139
           P +F +F         L+ LF+  + P  RFC +G+ L
Sbjct: 245 PVVFGAFPSLHAGWAMLEALFLSHVFPRYRFCFYGYVL 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,398,518
Number of Sequences: 5004
Number of extensions: 69343
Number of successful extensions: 279
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)