Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_K11
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.61 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    29   1.1  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    27   2.5  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   4.3  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    26   5.7  
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    25   9.9  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    25   9.9  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -1

Query: 746 LFACLLEPEVIERVVLLVLNRVDSKISATIHSLMSWFTVLVPYNSSSSHWLKNDSCRNYP 567
           + AC L+P++   +  L+ N  +  I+A  H L    T+L    + +S     DS  NY 
Sbjct: 505 VLACRLDPKIDNTISALLENGNNKVINANCHLLRELVTLLPASTAYTSSPYGGDSFYNYV 564

Query: 566 L 564
           L
Sbjct: 565 L 565


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 277  KKKHYADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSHEEI 402
            K+K Y  Q   SG   +   SIRK+C N+ +     L H  +
Sbjct: 1717 KQKEYVTQLILSGLLNKNTNSIRKTCMNILLYLRRQLGHHAL 1758


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -1

Query: 743 FACLLE-PEVIERVVLLVLN---RVDSKISATIHSLMSWFTVLVPYNSSSSHW 597
           F C LE PEV+     L ++   R D  +SA     + W T L+   SS SH+
Sbjct: 602 FNCFLELPEVLHGKKFLKVDEATREDMLMSAETPDDILWITTLISTGSSMSHF 654


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 355 NNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRRHHMAFTNGNT 480
           +N+SVT+   L +  +V++Y L       CR    AFTNG T
Sbjct: 853 SNISVTNENRLQYIHLVSNYYLNARLSRQCR----AFTNGFT 890


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 18/101 (17%)
 Frame = -1

Query: 704 VLLVLNRVDSKISATI--------HSLMSWFTVLVPYNSS----SSHWLKNDSCRN---- 573
           VL + N + S + A I        +SL+SW  +   +NS     S+ +L+ D C+N    
Sbjct: 30  VLSLTNSIQSNVGAVISYAVLYFVNSLLSWCMLSSWFNSKLSKLSAGYLQFD-CQNDGKC 88

Query: 572 YPLVMTDPLLRS--KFHLRFALALISCNSLLRVVFPLVNAM 456
           Y ++    L  +   FHL  A  L  CN+  RV   + N +
Sbjct: 89  YSVIAVHRLSFTLVMFHLFLAFILSLCNTRSRVAIKIQNGL 129


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -1

Query: 653 SLMSWFTVLVPYNSSSSHWLKNDSCRNYP-LVMTDPLLRSKFHLRFALALISCNSLLRVV 477
           SL+ + ++ V Y        + +    YP L + DP+ ++ F+   ++   SC  +L++V
Sbjct: 91  SLLVYLSIAVSYMLWVEKCYQMNKFYAYPILAILDPIKKTIFYTVASIISFSCYIVLKMV 150

Query: 476 FP 471
            P
Sbjct: 151 HP 152


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 1   YWISLDCACLVHLLYSCYVV*FSD 72
           +WI+  C+ + H  +SC +  F D
Sbjct: 83  HWIAFSCSVMCHFAWSCALPCFVD 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,270,636
Number of Sequences: 5004
Number of extensions: 65706
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)